Publications of J. Kopka

Pade, N., Erdmann, S., Enke, H., Dethloff, F., Duehring, U., Georg, J., Wambutt, J., Kopka, J., Hess, W. R., Zimmermann, R., Kramer, D. & Hagemann, M. Insights into isoprene production using the cyanobacterium Synechocystis sp PCC 6803. Biotechnology for Biofuels 9, (2016).

Rozier, C., Erban, A., Hamzaoui, J., Prigent-Combaret, C., Comte, G., Kopka, J. & Legendre, S. C. L. Xylem Sap Metabolite Profile Changes During Phytostimulation of Maize by the Plant Growth-Promoting Rhizobacterium, Azospirillum lipoferum CRT1. Metabolomics 6, (2016).

Sequera-Mutiozabal, M. I., Erban, A., Kopka, J., Atanasov, K. E., Bastida, J., Fotopoulos, V., Alcázar, R. & Tiburcio, A. F. Global metabolic profiling of arabidopsis polyamine oxidase 4 (AtPAO4) loss-of-function mutants exhibiting delayed dark-induced senescence. Frontiers in Plant Science 7, (2016).

Sprenger, H., Kurowsky, C., Horn, R., Erban, A., Seddig, S., Rudack, K., Fischer, A., Walther, D., Zuther, E., Koehl, K. I., Hincha, D. K. & Kopka, J. The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 39, 2370–2389 (2016).

Salek, R. M., Neumann, S., Schober, D., Hummel, J., Billiau, K., Kopka, J., Correa, E., Reijmers, T., Rosato, A., Tenori, L., Turano, P., Marin, S., Deborde, C., Jacob, D., Rolin, D., Dartigues, B., Conesa, P., Haug, K., Rocca-Serra, P., O'Hagan, S., Hao, J., Vliet, M. van, Sysi-Aho, M., Ludwig, C., Bouwman, J., Cascante, M., Ebbels, T., Griffin, J. L., Moing, A., Nikolski, M., Oresic, M., Sansone, S.-A., Viant, M. R., Goodacre, R., Guenther, U. L., Hankemeier, T., Luchinat, C., Walther, D. & Steinbeck, C. COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 11, 1587–1597 (2015).

Koehler, G., Rohloff, J., Wilson, R. C., Kopka, J., Erban, A., Winge, P., Bones, A. M., Davik, J., Alsheikh, M. K. & Randall, S. K. Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria x ananassa 'Korona'. Frontiers in Plant Science 6, (2015).

Agudelo-Romero, P., Erban, A., Rego, C., Carbonell-Bejerano, P., Nascimento, T., Sousa, L., Martinez-Zapater, J. M., Kopka, J. & Fortes, A. M. Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea. Journal of Experimental Botany 66, 1769–1785 (2015).

Richter, J. A., Erban, A., Kopka, J. & Zoerb, C. Metabolic contribution to salt stress in two maize hybrids with contrasting resistance. Plant Science 233, 107–115 (2015).

Kohl, S., Hollmann, J., Erban, A., Kopka, J., Riewe, D., Weschke, W. & Weber, H. Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling. Journal of Experimental Botany 66, 1397–1411 (2015).

Dobritzsch, S., Weyhe, M., Schubert, R., Dindas, J., Hause, G., Kopka, J. & Hause, B. Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. BMC Biology 13, (2015).

Gaude, N., Bortfeld, S., Erban, A., Kopka, J. & Krajinski, F. Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells. BMC Plant Biology 15, (2015).

Glaubitz, U., Erban, A., Kopka, J., Hincha, D. K. & Zuther, E. High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner. Journal of Experimental Botany 66, 6385–6397 (2015).

Klähn, S., Orf, I., Schwarz, D., Matthiessen, J. K. F., Kopka, J., Hess, W. R. & Hagemann, M. Integrated Transcriptomic and Metabolomic Characterization of the Low-Carbon Response Using an ndhR Mutant of Synechocystis sp. PCC 6803. Plant physiology 169, 1540–156 (2015).

Li, X., Lawas, L. M. F., Malo, R., Glaubitz, U., Erban, A., Mauleon, R., Heuer, S., Zuther, E., Kopka, J., Hincha, D. K. & Jagadish, K. S. V. Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress. Plant, Cell and Environment 38, 2171–2192 (2015).

Orf, I., Klähn, S., Schwarz, D., Frank, M., Hess, W. R., Hagemann, M. & Kopka, J. Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803. Plant Cell Physiology 169, 1787–1806 (2015).

Pant, B.-D., Pant, P., Erban, A., Huhman, D., Kopka, J. & Scheible, W.-R. Identification of primary and secondary metabolites with phosphorus status-dependent abundance in Arabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation. Plant, Cell and Environment 38, 172–187 (2015).

Sprenger, H., Rudack, K., Schudoma, C., Neumann, A., Seddig, S., Peters, R., Zuther, E., Kopka, J., Hincha, D. K., Walther, D. & Koehl, K. I. Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 42, 655–667 (2015).

Devanathan, S., Erban, A., Perez-Torres Jr., R., Kopka, J. & Makaroff, C. A. Arabidopsis thaliana Glyoxalase 2-1 Is Required during Abiotic Stress but Is Not Essential under Normal Plant Growth. PLOS ONE 9, (2014).

Gao, J., van Kleeff, P. J. M., Oecking, C., Li, K. W., Erban, A., Kopka, J., Hincha, D. K. & de Boer, A. H. Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins. The Plant Journal 80, 785–796 (2014).

Hemme, D., Veyel, D., Mühlhaus, T., Sommer, F., Jueppner, J., Unger, A.-K., Sandmann, M., Fehrle, I., Schönfelder, S., Steup, M., Geimer, S., Kopka, J., Giavalisco, P. & Schroda, M. Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26, 4270–4297 (2014).