Publications of A. R. Fernie

Messerli, G., Nia, V. P., Trevisan, M., Kolbe, A., Schauer, N., Geigenberger, P., Chen, J. C., Davison, A. C., Fernie, A. R. & Zeeman, S. C. Rapid classification of phenotypic mutants of arabidopsis via metabolite fingerprinting. Plant Physiology 143, 1484–1492 (2007).

Nunes-Nesi, A., Carrari, F., Gibon, Y., Sulpice, R., Lytovchenko, A., Fisahn, J., Graham, J., Ratcliffe, R. G., Sweetlove, L. J. & Fernie, A. R. Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50, 1093–1106 (2007).

Raschke, M., Buerkle, L., Mueller, N., Nunes-Nesi, A., Fernie, A. R., Arigoni, D., Amrhein, N. & Fitzpatrick, T. B. Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proceedings of the National Academy of Sciences of the United States of America 104, 19637–19642 (2007).

Saladie, M., Matas, A. J., Isaacson, T., Jenks, M. A., Goodwin, S. M., Niklas, K. J., Xiaolin, R., Labavitch, J. M., Shackel, K. A., Fernie, A. R., Lytovchenko, A., O'Neill, M. A., Watkins, C. B. & Rose, J. K. C. A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiology 144, 1012–1028 (2007).

Semel, Y., Schauer, N., Roessner, U., Zamir, D. & Fernie, A. R. Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3, 289–295 (2007).

Steuer, R., Nesi, A. N., Fernie, A. R., Gross, T., Blasius, B. & Selbig, J. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23, 1378–1385 (2007).

Studart-Guimaraes, C., Fait, A., Nunes-Nesi, A., Carrari, F., Usadel, B. & Fernie, A. R. Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145, 626–639 (2007).

Szymanski, J., Bielecka, M., Carrari, F., Fernie, A. R., Hoefgen, R. & Nikiforova, V. J. On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68, 2163–2175 (2007).

Fait, A., Angelovici, R., Less, H., Ohad, I., Urbanczyk-Wochniak, E., Fernie, A. R. & Galili, G. Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142, 839–854 (2006).

Farre, E. M., Tech, S., Trethewey, R. N., Fernie, A. R. & Willmitzer, L. Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62, 165–179 (2006).

Hackel, A., Schauer, N., Carrari, F., Fernie, A. R., Grimm, B. & Kuhn, C. Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant Journal 45, 180–192 (2006).

Hajirezaei, M.-R., Biemelt, S., Peisker, M., Lytovchenko, A., Fernie, A. R. & Sonnewald, U. The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. Journal of Experimental Botany 57, 2363–2377 (2006).

Ishizaki, K., Schauer, N., Larson, T. R., Graham, I. A., Fernie, A. R. & Leaver, C. J. The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal 47, 751–760 (2006).

Joshi, V., Laubengayer, K. M., Schauer, N., Fernie, A. R. & Jander, G. Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18, 3564–3575 (2006).

Junker, B. H., Wuttke, R., Nunes-Nesi, A., Steinhauser, D., Schauer, N., Buessis, D., Willmitzer, L. & Fernie, A. R. Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47, 277–289 (2006).

Kolbe, A., Oliver, S. N., Fernie, A. R., Stitt, M., van Dongen, J. T. & Geigenberger, P. Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141, 412–422 (2006).

Lisec, J., Schauer, N., Kopka, J., Willmitzer, L. & Fernie, A. R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1, 387–396 (2006).

Palmieri, L., Arrigoni, R., Blanco, E., Carrari, F., Zanor, M. I., Studart-Guimaraes, C., Fernie, A. R. & Palmieri, F. Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization. Plant Physiology 142, 855–865 (2006).

Schauer, N., Semel, Y., Roessner, U., Gur, A., Balbo, I., Carrari, F., Pleban, T., Perez-Melis, A., Bruedigam, C., Kopka, J., Willmitzer, L., Zamir, D. & Fernie, A. R. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24, 447–454 (2006).

Steinfath, M., Repsilber, D., Hische, M., Schauer, N., Fernie, A. R. & Selbig, J. Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, 2–18 (2006).