Publications of J. Kopka

Dethloff, F., Orf, I. & Kopka, J. Rapid in situ 13C tracing of sucrose utilization in Arabidopsis sink and source leaves. Plant Methods 13, (2017).

Pagter, M., Alpers, J., Erban, A., Kopka, J., Zuther, E. & Hincha, D. K. Rapid transcriptional and metabolic regulation of the deacclimation process in cold acclimated Arabidopsis thaliana. BMC Genomics 18, (2017).

Andersen, U. B., Kjaer, K. H., Erban, A., Alpers, J., Hincha, D. K., Kopka, J., Zuther, E. & Pagter, M. Impact of seasonal warming on overwintering and spring phenology of blackcurrant. Environmental and Experimental Botany 140, 96–109 (2017).

Glaubitz, U., Li, X., Schaedel, S., Erban, A., Sulpice, R., Kopka, J., Hincha, D. K. & Zuther, E. Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles. Plant, Cell and Environment 40, 121–137 (2017).

Heyneke, E., Watanabe, M., Erban, A., Duan, G. Y., Buchner, P., Walther, D., Kopka, J., Hawkesford, M. J. & Hoefgen, R. Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply. Frontiers in Plant Science 8, (2017).

Kopka, J., Schmidt, S., Dethloff, F., Pade, N., Berendt, S., Schottkowski, M., Martin, N., Dühring, U., Kuchmina, E., Enke, H., Kramer, D., Wilde, A., Hagemann, M. & Friedrich, A. Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002. Biotechnology for Biofuels 10, (2017).

Rahmoune, B., Morsli, A., Khelifi-Slaoui, M., Khelifi, L., Strueh, A., Erban, A., Kopka, J., Prell, J. & van Dongen, J. T. Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants. Journal of Plant Interaction 12, 1–6 (2017).

Rotsch, A. H., Kopka, J., Feussner, I. & Ischebeck, T. Central metabolite and sterol profiling divides tobacco male gametophyte development and pollen tube growth into eight metabolic phases. The Plant Journal 92, 129–146 (2017).

Treves, H., Murik, O., Kedem, I., Eisenstadt, D., Meir, S., Rogachev, I., Szymanski, J., Keren, N., Orf, I., Tiburcio, A. F., Alcazar, R., Aharoni, A., Kopka, J. & Kaplan, A. Metabolic Flexibility Underpins Growth Capabilities of the Fastest Growing Alga. Current Biology 27, 2559–2567 (2017).

Zarza, X., Atanasov, K. E., Marco, F., Arbona, V., Carrasco, P., Kopka, J., Fotopoulos, V., Munnik, T., Gomez-Cadenas, A., Tiburcio, A. F. & Alcazar, R. Polyamine oxidase 5 loss-of-function mutations in Arabidopsis thaliana trigger metabolic and transcriptional reprogramming and promote salt stress tolerance. Plant, Cell and Environment 40, 527–542 (2017).

Staroske, N., Conrad, U., Kumlehn, J., Hensel, G., Radchuk, R., Erban, A., Kopka, J., Weschke, W. & Weber, H. Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition. Journal of Experimental Botany 67, 2675–2687 (2016).

Coleto, I., Trenas, A. T., Erban, A., Kopka, J., Pineda, M. & Alamillo, J. M. Functional specialization of one copy of glutamine phosphoribosyl pyrophosphate amidotransferase in ureide production from symbiotically fixed nitrogen in Phaseolus vulgaris. Plant, Cell and Environment 39, 1767–1779 (2016).

Fuentes, P., Zhou, F., Erban, A., Karcher, D., Kopka, J. & Bock, R. A new synthetic biology approach allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop. eLife 5, (2016).

Gal, A., Wirth, R., Kopka, J., Fratzl, P., Faivre, D. & Scheffel, A. Macromolecular recognition directs calcium ions to coccolith mineralization sites. Science 353, 590–593 (2016).

Hilker, M., Schwachtje, J., Baier, M., Balazadeh, S., Bäurle, I., Geiselhardt, S., Hincha, D. K., Kunze, R., Mueller-Roeber, B., Rillig, M. C., Rolff, J., Romeis, T., Schmülling, T., Steppuhn, A., van Dongen, J., Whitcomb, S. J., Wurst, S., Zuther, E. & Kopka, J. Priming and memory of stress responses in organisms lacking a nervous system. Biological Reviews 91, 1118–1133 (2016).

Lee, Y. P., Funk, C., Erban, A., Kopka, J., Koehl, K. I., Zuther, E. & Hincha, D. K. Salt stress responses in a geographically diverse collection of Eutrema/Thellungiella spp. accessions. Functional Plant Biology 43, 590–606 (2016).

Lortzing, T., Calf, O. W., Boehlke, M., Schwachtje, J., Kopka, J., Geuss, D., Kosanke, S., van Dam, N. M. & Steppuhn, A. Extrafloral nectar secretion from wounds of Solanum dulcamara. Nature Plants 2, (2016).

Mumm, R., Hageman, J. A., Calingacion, M. N., de Vos, R. C. H., Jonker, H. H., Erban, A., Kopka, J., Hansen, T. H., Laursen, K. H., Schjoerring, J. K., Ward, J. L., Beale, M. H., Jongee, S., Rauf, A., Habibi, F., Indrasari, S. D., Sakhan, S., Ramli, A., Romero, M., Reinke, R. F., Ohtsubo, K., Boualaphanh, C., Fitzgerald, M. A. & Hall, R. D. Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics. Metabolomics 12, (2016).

Orf, I., Schwarz, D., Kaplan, A., Kopka, J., Hess, W. R., Hagemann, M. & Klähn, S. CyAbrB2 contributes to the transcriptional regulation of low CO2 acclimation in synechocystis sp. PCC 6803. Plant and Cell Physiology 57, 2232–2243 (2016).

Orf, I., Timm, S., Bauwe, H., Fernie, A. R., Hagemann, M., Kopka, J. & Nikoloski, Z. Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles. Journal of Experimental Botany 67, 2941–2952 (2016).