Publications of J. Kopka

Awada, R., Campa, C., Gibault, E., Dechamp, E., Georget, F., Lepelley, M., Abdallah, C., Erban, A., Martinez-Seidel, F., Kopka, J., Legendre, L., Leran, S., Conejero, G., Verdeil, J.-L., Crouzillat, D., Breton, D., Bertrand, B. & Etienne, H. Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 20, (2019).

Calabrese, S., Cusant, L., Sarazin, A., Niehl, A., Erban, A., Brulé, D., Recorbet, G., Wipf, D., Roux, C., Kopka, J., Boller, T. & Courty, P.-E. Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science 10, (2019).

Erban, A., Fehrle, I., Martinez-Seidel, F., Brigante, F., Más, A. L., Baroni, V., Wunderlin, D. & Kopka, J. Discovery of food identity markers by metabolomics and machine learning technology. Scientific Reports 9, (2019).

Heyneke, E., Watanabe, M., Erban, A., Duan, G., Buchner, P., Walther, D., Kopka, J., Hawkesford, M. J. & Hoefgen, R. Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling. Agronomy 9, (2019).

Li, L., Krznar, P., Erban, A., Agazzi, A., Martin-Levilain, J., Supale, S., Kopka, J., Zamboni, N. & Maechler, P. Metabolomics identifies a biomarker revealing in vivo loss of functional β-cell mass before diabetes onset. Diabetes 68, 2272–2286 (2019).

Madhavan, S., Paranidharan, V., Erban, A., Al-Sadi, A. M., Kopka, J. & Velazhahan, R. The metabolic response of suspension-cultured cells from blast-resistant and -susceptible rice (Oryza sativa L.) genotypes to a Pyricularia oryzae elicitor. Indian Phytopathology 72, 195–202 (2019).

Nieva, A. S., Vilas, J. M., Gárriz, A., Maiale, S. J., Menéndez, A. B., Erban, A., Kopka, J. & Ruiz, O. A. The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species. Plant Physiology and Biochemistry 144, 100–109 (2019).

Richter, J. A., Behr, J. H., Erban, A., Kopka, J. & Zoerb, C. Ion-dependent metabolic responses of Vicia faba L. to salt stress. Plant, Cell and Environment 42, 295–309 (2019).

Schwachtje, J., Whitcomb, S. J., Firmino, A. A. P., Zuther, E., Hincha, D. K. & Kopka, J. Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information? Frontiers in Plant Science 10, (2019).

Takahashi, D., Gorka, M., Erban, A., Graf, A., Kopka, J., Zuther, E. & Hincha, D. K. Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 9, (2019).

Ulaszewska, M. M., Weinert, C. H., Trimigno, A., Portmann, R., Andres Lacueva, C., Badertscher, R., Brennan, L., Brunius, C., Bub, A., Capozzi, F., Rosso, M. C., Cordero, C. E., Daniel, H., Durand, S., Egert, B., Ferrario, P. G., Feskens, E. J. M., Franceschi, P., Garcia-Aloy, M., Giacomoni, F., Giesbertz, P., Gonzalez-Dominguez, R., Hanhineva, K., Hemeryck, L. Y., Kopka, J., Kulling, S. E., Llorach, R., Manach, C., Mattivi, F., Migne, C., Munger, L. H., Ott, B., Picone, G., Pimentel, G., Pujos-Guillot, E., Riccadonna, S., Rist, M. J., Rombouts, C., Rubert, J., Skurk, T., Harsha, P. S. C. S., Van Meulebroek, L., Vanhaecke, L., Vazquez-Fresno, R., Wishart, D. & Vergeres, G. Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies. Molecular Nutriton & Food Research 63, (2019).

Wenke, K., Kopka, J., Schwachtje, J., van Dongen, J. T. & Piechulla, B. Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana. Plant Biology 21, 109–119 (2019).

Zuther, E., Schaarschmidt, S., Fischer, A., Erban, A., Pagter, M., Mubeen, U., Giavalisco, P., Kopka, J., Sprenger, H. & Hincha, D. K. Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis. Plant, Cell and Environment 42, 854–873 (2019).

Atanasov, K. E., Liu, C., Erban, A., Kopka, J., Parker, J. E. & Alcázar, R. NLR Mutations Suppressing Immune Hybrid Incompatibility and Their Effects on Disease Resistance. Plant Physiology 177, 1152–1169 (2018).

Beine-Golovchuk, O., Firmino, A. A. P., Dabrowska, A., Schmidt, S., Erban, A., Walther, D., Zuther, E., Hincha, D. K. & Kopka, J. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 176, 2251–2276 (2018).

Geuss, D., Lortzing, T., Schwachtje, J., Kopka, J. & Steppuhn, A. Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant’s Response to Herbivory and Impairs Larval Performance. International Journal of Molecular Sciences 19, (2018).

Rai, S., Lucius, S., Kern, R., Bauwe, H., Kaplan, A., Kopka, J. & Hagemann, M. The Synechocystis sp PCC 6803 Genome Encodes Up to Four 2-Phosphoglycolate Phosphatases. Frontiers in Plant Science 9, (2018).

Ruebsam, H., Kirsch, F., Reimann, V., Erban, A., Kopka, J., Hagemann, M., Hess, W. R. & Klaehn, S. The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp PCC 6803. Environmental Microbiology Reports 20, 2757–2768 (2018).

Schwachtje, J., Fischer, A., Erban, A. & Kopka, J. Primed primary metabolism in systemic leaves: a functional systems analysis. Scientific Reports 8, (2018).

Sprenger, H., Erban, A., Seddig, S., Rudack, K., Thalhammer, A., Le, M. Q., Walther, D., Zuther, E., Koehl, K. I., Kopka, J. & Hincha, D. K. Metabolite and transcript markers for the prediction of potato drought tolerance. Plant Biotechnology Journal 16, 939–950 (2018).