Publications of S. Alseekh

Qian, D., Xi, J., Nie, Y., Zou, M., Zhang, J., Alseekh, S., Fernie, A. R., Chen, J. & Huang, L. Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, (2023).

Aarabi, F., Ghigi, A., Wijesingha Ahchige, M., Bulut, M., Geigenberger, P., Neuhaus, H. E., Sampathkumar, A., Alseekh, S. & Fernie, A. R. Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193, 2037–2054 (2023).

Bulut, M., Wendenburg, R., Bitocchi, E., Bellucci, E., Kroc, M., Gioia, T., Susek, K., Papa, R., Fernie, A. R. & Alseekh, S. A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116, 1152–1171 (2023).

Zemach, I., Alseekh, S., Tadmor-Levi, R., Fisher, J., Torgeman, S., Trigerman, S., Nauen, J., Hayut, S. F., Mann, V., Rochsar, E., Finkers, R., Wendenburg, R., Osorio, S., Bergmann, S., Lunn, J. E., Semel, Y., Hirschberg, J., Fernie, A. R. & Zamir, D. Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116, 1136–1151 (2023).

Segarra-Medina, C., Alseekh, S., Fernie, A. R., Rambla, J. L., Pérez-Clemente, R. M., Gómez-Cádenas, A. & Zandalinas, S. I. Abscisic acid promotes plant acclimation to the combination of salinity and high light stress. Plant Physiology and Biochemistry 203, (2023).

Younis, I. Y., Mohsen, E., Ibrahim, R. M., Fernie, A. R., Alseekh, S. & Salem, M. A. Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, (2023).

Zayed, A., Farag, M. A., Mehring, A., Salem, M. A., Ibrahim, R. M., Alseekh, S., Fernie, A. R. & Ulber, R. Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach. Phytochemistry 213, (2023).

Alseekh, S., Karakas, E., Zhu, F., Wijesingha Ahchige, M. & Fernie, A. R. Plant biochemical genetics in the multiomics era. Journal of Experimental Botany 74, 4293–4307 (2023).

Correa Cordoba, S., Tong, H., Burgos, A., Zhu, F., Alseekh, S., Fernie, A. R. & Nikoloski, Z. Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 14, (2023).

Segarra-Medina, C., Pascual, L. S., Alseekh, S., Fernie, A. R., Rambla, J. L., Gómez-Cadenas, A. & Zandalinas, S. I. Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance. BMC Plant Biology 23, (2023).

Fernie, A. R. & Alseekh, S. Phylogenomic discovery of deleterious mutants completes the potato breeding revolution. Molecular Plant 16, 1103–1105 (2023).

Salem, M. A., Aborehab, N. M., Abdelhafez, M. M., Ismail, S. H., Maurice, N. W., Azzam, M. A., Alseekh, S., Fernie, A. R., Salama, M. M. & Ezzat, S. M. Anti-Obesity Effect of a Tea Mixture Nano-Formulation on Rats Occurs via the Upregulation of AMP-Activated Protein Kinase/Sirtuin-1/Glucose Transporter Type 4 and Peroxisome Proliferator-Activated Receptor Gamma Pathways. Metabolites 13, (2023).

Alseekh, S. & Fernie, A. R. Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, (2023).

Julca, I., Mutwil-Anderwald, D., Manoj, V., Khan, Z., Lai, S. K., Yang, L. K., Beh, I. T., Dziekan, J., Lim, Y. P., Lim, S. K., Low, Y. W., Lam, Y. I., Tjia, S., Mu, Y., Tan, Q. W., Nuc, P., Choo, L. M., Khew, G., Shining, L., Kam, A., Tam, J. P., Bozdech, Z., Schmidt, M., Usadel, B., Kanagasundaram, Y., Alseekh, S., Fernie, A. R., Li, H. Y. & Mutwil, M. Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites. Journal of Integrative Plant Biology 65, 1442–1466 (2023).

López, C. M., Alseekh, S., Torralbo, F., Martinez Rivas, F. J., Fernie, A. R., Amil-Ruiz, F. & Alamillo, J. M. Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany 74, 3203–3219 (2023).

Martinez Rivas, F. J., Blanco-Portales, R., Pérez-Serratosa, M., Ric-Varas, P., Sánchez, V. G., Puche, L. M., Moyano, L., Mercado, J. Á., Alseekh, S., Caballero, J. L., Fernie, A. R., Muñoz-Blanco, J. & Molina-Hidalgo, F. J. FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114, 683–698 (2023).

Wijesingha Ahchige, M., Fernie, A. R. & Alseekh, S. PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192, 442–468 (2023).

Bulut, M., Alseekh, S. & Fernie, A. R. Natural variation of respiration-related traits in plants. Plant Physiology 191, 2120–2132 (2023).

Bellucci, E., Benazzo, A., Xu, C., Bitocchi, E., Rodriguez, M., Alseekh, S., Di Vittori, V., Gioia, T., Neumann, K., Cortinovis, G., Frascarelli, G., Murube, E., Trucchi, E., Nanni, L., Ariani, A., Logozzo, G., Shin, J. H., Liu, C., Jiang, L., Ferreira, J. J., Campa, A., Attene, G., Morrell, P. L., Bertorelle, G., Graner, A., Gepts, P., Fernie, A. R., Jackson, S. A. & Papa, R. Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, (2023).

Poplawski, P., Alseekh, S., Jankowska, U., Skupien-Rabian, B., Iwanicka-Nowicka, R., Kossowska, H., Fogtman, A., Rybicka, B., Bogusławska, J., Adamiok-Ostrowska, A., Hanusek, K., Hanusek, J., Koblowska, M., Fernie, A. R. & Piekiełko-Witkowska, A. Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration. Cancer Cell International 23, (2023).