Publications of Z. Nikoloski
All genres
Journal Article (195)
Journal Article
Küken, A., , , , Arend, M., , , , Nikoloski, Z., , & Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 14, (2023).
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Messer, M., Tong, H., Nikoloski, Z. & Laitinen, R. A. E. Heritability of temperature-mediated flower size plasticity in Arabidopsis thaliana. Quantitative Plant Biology 4, (2023).
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Omranian, N. & Nikoloski, Z. CUBCO+: prediction of protein complexes based on min-cut network partitioning into biclique spanned subgraphs. Applied Network Science 7, (2022).
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Wiszniewski, A. A. G., Uberegui, E., Messer, M., Sultanova, G., , Duarte, G. T., Vicente, R., Sageman-Furnas, K., Fernie, A. R., Nikoloski, Z. & Laitinen, R. A. E. Temperature-mediated flower size plasticity in Arabidopsis. iScience 25, (2022).
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Nikoloski, Z. Strategies to identify and dissect trade-offs in plants. Molecular Ecology (2022). doi:10.1111/mec.16780
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Omranian, N., Nikoloski, Z., Fernie, A. R., , & Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession. International Journal of Molecular Sciences 23, (2022).
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Huß, S., , , & Nikoloski, Z. An automated workflow that generates atom mappings for large-scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal 111, 1486–1500 (2022).
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Mbebi, A. J., , , , , Tong, H., , , & Nikoloski, Z. A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids. G3: Genes, Genomes, Genetics 12, (2022).
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Matz, T., Wang, Y., , Sampathkumar, A. & Nikoloski, Z. Topological properties accurately predict cell division events and organization of shoot apical meristem in Arabidopsis thaliana. Development 149, (2022).
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Hashemi, S., Razaghi-Moghadam, Z., & Nikoloski, Z. Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 20, 3963–3971 (2022).
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Østerlund, I., , , , , , , Nikoloski, Z., & Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 149, (2022).
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Langary, D. & Nikoloski, Z. The hidden simplicity of metabolic networks is revealed by multireaction dependencies. Science Advances 8, (2022).
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Tong, H., Nankar, A. N., , , , , , , , , & Nikoloski, Z. Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits. Horticulture Research 9, (2022).
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Nikoloski, Z. COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions. PLoS Computational Biology 18, (2022).
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Nikoloski, Z. Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis. mSystems 7, (2022).
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Calderan-Rodrigues, M. J., Luzarowski, M., Monte Bello, C. C., , Zühlke, B. M., Nikoloski, Z., Skirycz, A. & Caldana, C. Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, (2021).
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Treves, H., Küken, A., Arrivault, S., Ishihara, H., , Erban, A., Höhne, M., Moraes, T. A., Kopka, J., , Nikoloski, Z. & Stitt, M. Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, 78–91 (2021).
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Swart, C., Graf, A., Arrivault, S., Tillich, M., Proost, S., Nikoloski, Z., Stitt, M., Bock, R., & Boulouis, A. Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7, (2021).
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Razaghi-Moghadam, Z. & Nikoloski, Z. Identification of flux trade-offs in metabolic networks. Scientific Reports 11, (2021).
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Omranian, N. & Nikoloski, Z. Coherent network partitions: Characterizations with cographs and prime graphs. Theoretical computer science 894, 3–11 (2021).
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