Publications of A. R. Fernie

Sulpice, R.; Trenkamp, S.; Steinfath, M.; Usadel, B.; Gibon, Y.; Witucka-Wall, H.; Pyl, E. T.; Tschoep, H.; Steinhauser, M.-C.; Guenther, M. et al.; Hoehne, M.; Rohwer, J. M.; Altmann, T.; Fernie, A. R.; Stitt, M.: Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 22 (8), pp. 2872 - 2893 (2010)

Sweetlove, L. J.; Beard, K. F. M.; Nunes-Nesi, A.; Fernie, A. R.; Ratcliffe, R. G.: Not just a circle: flux modes in the plant TCA cycle. Trends in Plant Science 15 (8), pp. 462 - 470 (2010)

Taylor, L.; Nunes-Nesi, A.; Parsley, K.; Leiss, A.; Leach, G.; Coates, S.; Wingler, A.; Fernie, A. R.; Hibberd, J. M.: Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. The Plant Journal 62 (4), pp. 641 - 652 (2010)

Tohge, T.; Fernie, A. R.: Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nature Protocols 5 (6), pp. 1210 - 1227 (2010)

van der Merwe, M. J.; Osorio, S.; Araujo, W. L.; Balbo, I.; Nunes-Nesi, A.; Maximova, E.; Carrari, F.; Bunik, V. I.; Persson, S.; Fernie, A. R.: Tricarboxylic Acid Cycle Activity Regulates Tomato Root Growth via Effects on Secondary Cell Wall Production. Plant Physiology 153 (2), pp. 611 - 621 (2010)

Vogel, J. T.; Walter, M. H.; Giavalisco, P.; Lytovchenko, A.; Kohlen, W.; Charnikhova, T.; Simkin, A. J.; Goulet, C.; Strack, D.; Bouwmeester, H. J. et al.; Fernie, A. R.; Klee, H. J.: SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. The Plant Journal 61 (2), pp. 300 - 311 (2010)

Angelovici, R.; Fait, A.; Zhu, X. H.; Szymanski, J.; Feldmesser, E.; Fernie, A. R.; Galili, G.: Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development. Plant Physiology 151 (4), pp. 2058 - 2072 (2009)

Brautigam, K.; Dietzel, L.; Kleine, T.; Stroher, E.; Wormuth, D.; Dietz, K. J.; Radke, D.; Wirtz, M.; Hell, R.; Doermann, P. et al.; Nunes-Nesi, A.; Schauer, N.; Fernie, A. R.; Oliver, S. N.; Geigenberger, P.; Leister, D.; Pfannschmidt, T.: Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis. The Plant Cell 21 (9), pp. 2715 - 2732 (2009)

Bunik, V. I.; Fernie, A. R.: Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation. Biochemical Journal 422 (3), pp. 405 - 421 (2009)

Depuydt, S.; Trenkamp, S.; Fernie, A. R.; Elftieh, S.; Renou, J. P.; Vuylsteke, M.; Holsters, M.; Vereecke, D.: An Integrated Genomics Approach to Define Niche Establishment by Rhodococcus fascians. Plant Physiology 149 (3), pp. 1366 - 1386 (2009)

Fernie, A. R.; Martinoia, E.: Malate. Jack of all trades or master of a few? Phytochemistry 70 (7), pp. 828 - 832 (2009)

Fernie, A. R.; Schauer, N.: Metabolomics-assisted breeding: a viable option for crop improvement? Trends in Genetics 25 (1), pp. 39 - 48 (2009)

Gilbert, L.; Alhagdow, M.; Nunes-Nesi, A.; Quemener, B.; Guillon, F.; Bouchet, B.; Faurobert, M.; Gouble, B.; Page, D.; Garcia, V. et al.; Petit, J.; Stevens, R.; Causse, M.; Fernie, A. R.; Lahaye, M.; Rothan, C.; Baldet, P.: GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60 (3), pp. 499 - 508 (2009)

Janacek, S. H.; Trenkamp, S.; Palmer, B.; Brown, N. J.; Parsley, K.; Stanley, S.; Astley, H. M.; Rolfe, S. A.; Quick, W. P.; Fernie, A. R. et al.; Hibberd, J. M.: Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59 (2), pp. 329 - 343 (2009)

Lehmann, M.; Schwarzlander, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Moller, B. L.; Fernie, A. R. et al.; Sweetlove, L. J.; Laxa, M.: The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2 (3), pp. 390 - 406 (2009)

Liu, Y. J.; Nunes-Nesi, A.; Wallstrom, S. V.; Lager, I.; Michalecka, A. M.; Norberg, F. E. B.; Widell, S.; Fredlund, K. M.; Fernie, A. R.; Rasmusson, A. G.: A Redox-Mediated Modulation of Stem Bolting in Transgenic Nicotiana sylvestris Differentially Expressing the External Mitochondrial NADPH Dehydrogenase. Plant Physiology 150 (3), pp. 1248 - 1259 (2009)

Lytovchenko, A.; Beleggia, R.; Schauer, N.; Isaacson, T.; Leuendorf, J. E.; Hellmann, H.; Rose, J. K. C.; Fernie, A. R.: Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues. Plant Methods 5, p. 4 (2009)

Marchive, C.; Yehudai-Resheff, S.; Germain, A.; Fei, Z. J.; Jiang, X. S.; Judkins, J.; Wu, H.; Fernie, A. R.; Fait, A.; Stern, D. B.: Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis. Plant Physiology 151 (2), pp. 905 - 924 (2009)

Osorio, S.; Tohge, T.; Fernie, A. R.: Application of metabolomic profiling for identififying valuable traits in tomato. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 4 (024), pp. 1 - 9 (2009)

Palmieri, F.; Rieder, B.; Ventrella, A.; Blanco, E.; Do, P. T.; Nunes-Nesi, A.; Trauth, A. U.; Fiermonte, G.; Tjaden, J.; Agrimi, G. et al.; Kirchberger, S.; Paradies, E.; Fernie, A. R.; Neuhaus, H. E.: Molecular Identification and Functional Characterization of Arabidopsis thaliana Mitochondrial and Chloroplastic NAD(+) Carrier Proteins. The Journal of Biological Chemistry 284 (45), pp. 31249 - 31259 (2009)