Publications of A. R. Fernie

Ishihara, H.; Obata, T.; Sulpice, R.; Fernie, A. R.; Stitt, M.: Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic 13CO2 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein. Plant Physiology 168 (1), pp. 74 - 93 (2015)

Lotkowska, M. E.; Tohge, T.; Fernie, A. R.; Xue, G.-P.; Balazadeh, S.; Mueller-Roeber, B.: The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Cell Physiology 169 (3), pp. 1862 - 1880 (2015)

Obata, T.; Witt, S.; Lisec, J.; Palacios-Rojas, N.; Florez-Sarasa, I. D.; Yousfi, S.; Araus, J. L.; Cairns, J. E.; Fernie, A. R.: Metabolite Profiles of Maize Leaves in Drought, Heat, and Combined Stress Field Trials Reveal the Relationship between Metabolism and Grain Yield. Plant Physiology 169 (4), pp. 2665 - 2683 (2015)

Omranian, N.; Kleessen, S.; Tohge, T.; Klie, S.; Basler, G.; Mueller-Roeber, B.; Fernie, A. R.; Nikoloski, Z.: Differential metabolic and coexpression networks of plant metabolism. Trends in Plant Science 20 (5), pp. 266 - 268 (2015)

Pham, P. A.; Wahl, V.; Tohge, T.; de Souza, L. P.; Zhang, Y.; Do, P. T.; Olas, J. J.; Stitt, M.; Araujo, W. L.; Fernie, A. R.: Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis. Plant Molecular Biology 89 (4-5), pp. 319 - 338 (2015)

Sade, D.; Shriki, O.; Cuadros-Inostroza, A. C.; Tohge, T.; Semel, Y.; Haviv, Y.; Willmitzer, L.; Fernie, A. R.; Czosnek, H.; Brotman, Y.: Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars. Metabolomics 11 (1), pp. 81 - 97 (2015)

Tohge, T.; Scossa, F.; Fernie, A. R.: Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiology 169 (3), pp. 1499 - 1511 (2015)

Tohge, T.; Zhang, Y.; Peterek, S.; Matros, A.; Rallapalli, G.; Tandron, Y. A.; Butelli, E.; Kallam, K.; Hertkorn, N.; Mock, H.-P. et al.; Martin, C.; Fernie, A. R.: Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato. The Plant Journal 83 (4), pp. 686 - 704 (2015)

Toubiana, D.; Batushansky, A.; Tzfadia, O.; Scossa, F.; Khan, A.; Barak, S.; Zamir, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81 (1), pp. 121 - 133 (2015)

Vallarino, J. G.; Osorio, S.; Bombarely, A.; Casanal, A.; Cruz-Rus, E.; Sanchez-Sevilla, J. F.; Amaya, I.; Giavalisco, P.; Fernie, A. R.; Botella, M. A. et al.; Valpuesta, V.: Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening. The New Phytologist 208 (2), pp. 482 - 496 (2015)

Wang, T.; Tohge, T.; Ivakov, A.; Mueller-Roeber, B.; Fernie, A. R.; Mutwil, M.; Schippers, J. H. M.; Persson, S.: Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiology 169 (2), pp. 1027 - 1041 (2015)

Weiwei, W.; Li, K.; Alseekh, S.; Omranian, N.; Zhao, L.; Zhou, Y.; Xiao, Y.; Jin, M.; Yang, N.; Liu, H. et al.; Florian, A.; Li, W.; Pan, Q.; Nikoloski, Z.; Yan, J.; Fernie, A. R.: Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27 (7), pp. 1839 - 1856 (2015)

Zhang, Y.; Butelli, E.; Alseekh, S.; Tohge, T.; Rallapalli, G.; Luo, J.; Kawar, P. G.; Hill, L.; Santino, A.; Fernie, A. R. et al.; Martin, C.: Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nature communications 6, 8635 (2015)

Zuchi, S.; Watanabe, M.; Hubberten, H. M.; Bromke, M. A.; Osorio, S.; Fernie, A. R.; Celletti, S.; Paolacci, A. R.; Catarcione, G.; Ciaffi, M. et al.; Hoefgen, R.; Astolfi, S.: The Interplay between Sulfur and Iron Nutrition in Tomato. Plant Physiology 169 (4), pp. 2624 - 2639 (2015)

Braun, H.-P.; Binder, S.; Brennicke, A.; Eubel, H.; Fernie, A. R.; Finkemeier, I.; Klodmann, J.; König, A.-C.; Kühn, K.; Meyer, E. H. et al.; Obata, T.; Schwarzländer, M.; Takenaka, M.; Zehrmann, A.: The life of plant mitochondrial complex I. Mitochondrion 19, Part B (0), pp. 295 - 313 (2014)

Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Schwahn, K.; de Souza, L. P.; Fernie, A. R.; Tohge, T.: Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56 (9), pp. 864 - 875 (2014)

Balazadeh, S.; Schildhauer, J.; Araujo, W. L.; Munne-Bosch, S.; Fernie, A. R.; Proost, S.; Humbeck, K.; Mueller-Roeber, B.: Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65 (14), pp. 3975 - 3992 (2014)

Ewald, R.; Hoffmann, C.; Florian, A.; Neuhaus, E.; Fernie, A. R.; Bauwe, H.: Lipoate-Protein Ligase and Octanoyltransferase Are Essential for Protein Lipoylation in Mitochondria of Arabidopsis1[W][OPEN]. Plant Physiology 165 (3), pp. 978 - 990 (2014)

Sauvage, C.; Segura, V.; Bauchet, G.; Stevens, R.; Do, P. T.; Nikoloski, Z.; Fernie, A. R.; Causse, M.: Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiology 165 (3), pp. 1120 - 1132 (2014)