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Toepfer, N.; Caldana, C.; Grimbs, S.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.: Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25 (4), pp. 1197 - 1211 (2013)

Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)

de Souza, W. R.; Morais, E. R.; Krohn, N. G.; Savoldi, M.; Goldman, M. H. S.; Rodrigues, F.; Caldana, C.; Semelka, C. T.; Tikunov, A. P.; Macdonald, J. M. et al.; Goldman, G. H.: Identification of Metabolic Pathways Influenced by the G-Protein Coupled in Aspergillus nidulans. PLoS One 8 (5), e62088 (2013)

Perez-Perez, J. M.; Esteve-Bruna, D.; Gonzalez-Bayon, R.; Kangasjarvi, S.; Caldana, C.; Hannah, M. A.; Willmitzer, L.; Ponce, M. R.; Micol, J. L.: Functional redundancy and divergence within the Arabidopsis RETICULATA-RELATED gene family. Plant Physiology 162 (2), pp. 589 - 603 (2013)

Caldana, C.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches. Frontiers in Plant Science 3, p. 267 (2012)

Hubberten, H.-M.; Klie, S.; Caldana, C.; Degenkolbe, T.; Willmitzer, L.; Hoefgen, R.: An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70 (4), pp. 666 - 677 (2012)

Klie, S.; Caldana, C.; Nikoloski, Z.: Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 3, p. 249 (2012)

Morales, S. G.; Trejo-Tellez, L. I.; Gomez Merino, F. C.; Caldana, C.; Espinosa-Victoria, D.; Herrera Cabrera, B. E.: Growth, photosynthetic activity, and potassium and sodium concentration in rice plants under salt stress. ACTA SCIENTIARUM-AGRONOMY 34 (3), pp. 317 - 324 (2012)

Balazadeh, S.; Kwasniewski, M.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Xue, G. P.; Mueller-Roeber, B.: ORS1, an H(2)O(2)-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana. Molecular Plant 4 (2), pp. 346 - 360 (2011)

Caldana, C.; Degenkolbe, T.; Cuadros-Inostroza, A.; Klie, S.; Sulpice, R.; Leisse, A.; Steinhauser, D.; Fernie, A. R.; Willmitzer, L.; Hannah, M. A.: High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67 (5), pp. 869 - 884 (2011)

Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)

Balazadeh, S.; Siddiqui, H.; Allu, A. D.; Matallana-Ramirez, L. P.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Koehler, B.; Mueller-Roeber, B.: A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant Journal 62 (2), pp. 250 - 264 (2010)

Espinoza, C.; Degenkolbe, T.; Caldana, C.; Zuther, E.; Leisse, A.; Willmitzer, L.; Hincha, D. K.; Hannah, M. A.: Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis. PLoS One 5 (11), p. e14101 (2010)

Hannah, M. A.; Caldana, C.; Steinhauser, D.; Balbo, I.; Fernie, A. R.; Willmitzer, L.: Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression. Plant Physiology 152 (4), pp. 2120 - 2129 (2010)

Massonnet, C.; Vile, D.; Fabre, J.; Hannah, M. A.; Caldana, C.; Lisec, J.; Beemster, G. T. S.; Meyer, R. C.; Messerli, G.; Gronlund, J. T. et al.; Perkovic, J.; Wigmore, E.; May, S.; Bevan, M. W.; Meyer, C.; Rubio-Diaz, S.; Weigel, D.; Micol, J. L.; Buchanan-Wollaston, V.; Fiorani, F.; Walsh, S.; Rinn, B.; Gruissem, W.; Hilson, P.; Hennig, L.; Willmitzer, L.; Granier, C.: Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories. Plant Physiology 152 (4), pp. 2142 - 2157 (2010)

Robles, P.; Fleury, D.; Candela, H.; Cnops, G.; Alonso-Peral, M. M.; Anami, S.; Falcone, A.; Caldana, C.; Willmitzer, L.; Ponce, M. R. et al.; van Lijsebettens, M.; Micol, J. L.: The RON1/FRY1/SAL1 Gene Is Required for Leaf Morphogenesis and Venation Patterning in Arabidopsis. Plant Physiology 152 (3), pp. 1357 - 1372 (2010)

Cuadros-Inostroza, A.; Caldana, C.; Redestig, H.; Kusano, M.; Lisec, J.; Pena-Cortes, H.; Willmitzer, L.; Hannah, M. A.: TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, p. 428 (2009)

Caldana, C.; Scheible, W.-R.; Mueller-Roeber, B.; Ruzicic, S.: A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, p. 7 (2007)

Mueller-Roeber, B.; Riano-Pachon, D.M.; Ruzicic, S.; Skirycz, A.; Caldana, C.; Witt, I.; Zanor, M.-I.: Pflanzliche Regulatorproteine. Bioforum 6, pp. 32 - 34 (2005)

Thieme, F.; Koebnik, R.; Bekel, T.; Berger, C.; Boch, J.; Buttner, D.; Caldana, C.; Gaigalat, L.; Goesmann, A.; Kay, S. et al.; Kirchner, O.; Lanz, C.; Linke, B.; McHardy, A.; Meyer, F.; Mittenhuber, G.; Nies, D.; Niesbach-Klosgen, U.; Patschkowski, T.; Ruckert, C.; Rupp, O.; Schneiker, S.; Schuster, S.; Vorholter, F.; Weber, E.; Puhler, A.; Bonas, U.; Bartels, D.; Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187 (21), pp. 7254 - 7266 (2005)