Publications of B. Usadel

Sreenivasulu, N.; Usadel, B.; Winter, A.; Radchuk, V.; Scholz, U.; Stein, N.; Weschke, W.; Strickert, M.; Close, T. J.; Stitt, M. et al.; Graner, A.; Wobus, U.: Barley grain maturation and germination: Metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiology 146 (4), pp. 1738 - 1758 (2008)

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Poree, F.; Hoehne, M.; Guenter, M.; Trethewey, R.; Kamlage, B.; Poorter, H.; Stitt, M.: Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range. Plant, Cell and Environment 31 (4), pp. 518 - 547 (2008)

Usadel, B.; Blaesing, O. E.; Gibon, Y.; Retzlaff, K.; Hoehne, M.; Guenther, M.; Stitt, M.: Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146 (4), pp. 1834 - 1861 (2008)

Wilkinson, M. D.; Senger, M.; Kawas, E.; Bruskiewich, R.; Gouzy, J.; Noirot, C.; Bardou, P.; Ng, A.; Haase, D.; Saiz, E. D. et al.; Wang, D.; Gibbons, F.; Gordon, P. M. K.; Sensen, C. W.; Carrasco, J. M. R.; Fernandez, J. M.; Shen, L.; Links, M.; Ng, M.; Opushneva, N.; Neerincx, P. B. T.; Leunissen, J. A. M.; Ernst, R.; Twigger, S.; Usadel, B.; Good, B.; Wong, Y.; Stein, L.; Crosby, W.; Karlsson, J.; Royo, R.; Parraga, I.; Ramirez, S.; Gelpi, J. L.; Trelles, O.; Pisano, D. G.; Jimenez, N.; Kerhornou, A.; Rosset, R.; Zamacola, L.; Tarraga, J.; Huerta-Cepas, J.; Carazo, J. M.; Dopazo, J.; Guigo, R.; Navarro, A.; Orozco, M.; Valencia, A.; Claros, M. G.; Perez, A. J.; Aldana, J.; Rojano, M. M.; Cruz, R. F. S.; Navas, I.; Schiltz, G.; Farmer, A.; Gessler, D.; Schoof, H.; Groscurth, A.; Consortium, B.: Interoperability with Moby 1.0 - Its better than sharing your toothbrush. Briefings in Bioinformatics 9 (3), pp. 220 - 231 (2008)

Morcuende, R.; Bari, R.; Gibon, Y.; Zheng, W.; Pant, B. D.; Blaesing, O.; Usadel, B.; Czechowski, T.; Udvardi, M. K.; Stitt, M. et al.; Scheible, W.-R.: Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell and Environment 30 (1), pp. 85 - 112 (2007)

Osuna, D.; Usadel, B.; Morcuende, R.; Gibon, Y.; Blaesing, O. E.; Hoehne, M.; Gunter, M.; Kamlage, B.; Trethewey, R.; Scheible, W.-R. et al.; Stitt, M.: Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49 (3), pp. 463 - 491 (2007)

Rotter, A.; Usadel, B.; Baebler, S.; Stitt, M.; Gruden, K.: Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods 3, p. 10 (2007)

Strickert, M.; Sreenivasulu, N.; Usadel, B.; Seiffert, U.: Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinformatics 8, p. 165 (2007)

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

Sulpice, R.; Tschoep, H.; von Korff, M.; Buessis, D.; Usadel, B.; Hoehne, M.; Witucka-Wall, H.; Altmann, T.; Stitt, M.; Gibon, Y.: Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment 30 (9), pp. 1163 - 1175 (2007)

Tellstroem, V.; Usadel, B.; Thimm, O.; Stitt, M.; Kuester, H.; Niehaus, K.: The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiology 143 (2), pp. 825 - 837 (2007)

Carrari, F.; Baxter, C.; Usadel, B.; Urbanczyk-Wochniak, E.; Zanor, M. I.; Nunes-Nesi, A.; Nikiforova, V.; Centero, D.; Ratzka, A.; Pauly, M. et al.; Sweetlove, L. J.; Fernie, A. R.: Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiology 142 (4), pp. 1380 - 1396 (2006)

Gibon, Y.; Usadel, B.; Blaesing, O. E.; Kamlage, B.; Hoehne, M.; Trethewey, R.; Stitt, M.: Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7 (8), p. R76 (2006)

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)

Blaesing, O. E.; Gibon, Y.; Guenther, M.; Hoehne, M.; Morcuende, R.; Osuna, D.; Thimm, O.; Usadel, B.; Scheible, W.-R.; Stitt, M.: Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17 (12), pp. 3257 - 3281 (2005)

Kanter, U.; Usadel, B.; Guerineau, F.; Li, Y.; Pauly, M.; Tenhaken, R.: The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221 (2), pp. 243 - 254 (2005)

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)