Publications of B. Usadel

Strickert, M.; Sreenivasulu, N.; Usadel, B.; Seiffert, U.: Correlation-maximizing surrogate gene space for visual mining of gene expression patterns in developing barley endosperm tissue. BMC Bioinformatics 8, p. 165 (2007)

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

Sulpice, R.; Tschoep, H.; von Korff, M.; Buessis, D.; Usadel, B.; Hoehne, M.; Witucka-Wall, H.; Altmann, T.; Stitt, M.; Gibon, Y.: Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase. Plant Cell and Environment 30 (9), pp. 1163 - 1175 (2007)

Tellstroem, V.; Usadel, B.; Thimm, O.; Stitt, M.; Kuester, H.; Niehaus, K.: The lipopolysaccharide of Sinorhizobium meliloti suppresses defense-associated gene expression in cell cultures of the host plant Medicago truncatula. Plant Physiology 143 (2), pp. 825 - 837 (2007)

Gibon, Y.; Usadel, B.; Blaesing, O. E.; Kamlage, B.; Hoehne, M.; Trethewey, R.; Stitt, M.: Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7 (8), p. R76 (2006)

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

Blaesing, O. E.; Gibon, Y.; Guenther, M.; Hoehne, M.; Morcuende, R.; Osuna, D.; Thimm, O.; Usadel, B.; Scheible, W.-R.; Stitt, M.: Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17 (12), pp. 3257 - 3281 (2005)

Kanter, U.; Usadel, B.; Guerineau, F.; Li, Y.; Pauly, M.; Tenhaken, R.: The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221 (2), pp. 243 - 254 (2005)

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)

Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), pp. 3647 - 3651 (2004)

Usadel, B.; Kuschinsky, A. M.; Rosso, M. G.; Eckermann, N.; Pauly, M.: RHM2 is involved in mucilage pectin synthesis and is required for the development of the seed coat in Arabidopsis. Plant Physiology 134 (1), pp. 286 - 295 (2004)

Usadel, B.; Schluter, U.; Molhoj, M.; Gipmans, M.; Verma, R.; Kossmann, J.; Reiter, W. D.; Pauly, M.: Identification and characterization of a UDP-D-glucuronate 4-epimerase in Arabidopsis. FEBS Letters 569 (1-3), pp. 327 - 331 (2004)

Lerouxel, O.; Choo, T. S.; Seveno, M.; Usadel, B.; Faye, L.; Lerouge, P.; Pauly, M.: Rapid structural phenotyping of plant cell wall mutants by enzymatic oligosaccharide fingerprinting. Plant Physiology 130 (4), pp. 1754 - 1763 (2002)

Steinhauser, D.; Krall, L.; Müssig, C.; Büssis, D.; Usadel, B.: Correlation Networks. In: Analysis of Biological Networks, 13 (Eds. Junker, B. H.; Schreiber, F.; Zomaya, A. Y.). Wiley (2008)

Steinhauser, D.; Usadel, B.: CSB.DB - A Comprehensive Systems-Biology Database: Overview and Transcriptional Co-Response (Correlation) Analysis. In: Plant Genomics and Bioinformatics Expression Micro Arrays and Beyond - a course book, pp. 190 - 192 (Ed. Freitag, J.). MPI-MP, Potsdam-Golm (2006)

Thimm, O.; Blaesing, O.; Usadel, B.; Gibon, Y.: Evaluation of the transcriptome and genome to inform the study of metabolic control in plants. In: Advances in Plant Research - Control of Primary Metabolism in Plants (Eds. Plaxton, W.; MacManus, M.). Blackwell Publ., Oxford, UK (2005)

Poorter, H.; Fiorani, F.; Stitt, M.; Schurr, U.; Finck, A.; Gibon, Y.; Usadel, B.; Munns, R.; Atkin, O. K.; Tardieu, F. et al.; Pons, T. L.: The art of growing plants for experimental purposes: a practical guide for the plant biologist Review. Functional Plant Biology 39 (10-11), pp. 821 - 838 (2012)

Muessig, C.; Schroeder, F.; Usadel, B.; Lisso, J.: Structure and putative function of NFX1-like proteins in plants. Plant Biology 12 (3), pp. 381 - 394 (2010)

Schulze, W. X.; Usadel, B.: Quantitation in Mass-Spectrometry-Based Proteomics. Annual Review of Plant Biology 61, pp. 491 - 516 (2010)