Publikationen von S. Greiner

Golczyk, H., Hřibová, E., Doležel, J., Cuadrado, Á., Garbsch, F., Greiner, S., Janeczko, M., Szklarczyk, M., Masłyk, M. & Kubiński, K. Migration of repetitive DNAs during evolution of the permanent translocation heterozygosity in the oyster plant (Tradescantia section Rhoeo). Chromosoma: Biology of the Nucleus 131, 163–173 (2022).

Kariñho-Betancourt, E., Carlson, D., Hollister, J., Fischer, A., Greiner, S. & Johnson, M. T. J. The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17, (2022).

Fischer, A., Dotzek, J., Walther, D. & Greiner, S. Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4, (2022).

Santangelo, J. S., Ness, R. W., Cohan, B., Fitzpatrick, C. R., Innes, S. G., Koch, S., Miles, L. S., Munim, S., Peres-Neto, P. R., Prashad, C., Tong, A. T., Aguirre, W. E., Akinwole, P. O., Alberti, M., Álvarez, J., Anderson, J. T., Anderson, J. J., Ando, Y., Andrew, N. R., Angeoletto, F., Anstett, D. N., Anstett, J., Aoki-Gonçalves, F., Arietta, A. Z. A., Arroyo, M. T. K., Austen, E. J., Baena-Díaz, F., Barker, C. A., Baylis, H. A., Beliz, J. M., Benitez-Mora, A., Bickford, D., Biedebach, G., Blackburn, G. S., Boehm, M. M. A., Bonser, S. P., Bonte, D., Bragger, J. R., Branquinho, C., Brans, K. I., Bresciano, J. C., Brom, P. D., Bucharova, A., Burt, B., Cahill, J. F., Campbell, K. D., Carlen, E. J., Carmona, D., Castellanos, M. C., Centenaro, G., Chalen, I., Chaves, J. A., Chávez-Pesqueira, M., Chen, X.-Y., Chilton, A. M., Chomiak, K. M., Cisneros-Heredia, D. F., Cisse, I. K., Classen, A. T., Comerford, M. S., Fradinger, C. C., Corney, H., Crawford, A. J., Crawford, K. M., Dahirel, M., David, S., De Haan, R., Deacon, N. J., Dean, C., Del-Val, E., Deligiannis, E. K., Denney, D., Dettlaff, M. A., DiLeo, M. F., Ding, Y.-Y., Domínguez-López, M. E., Dominoni, D. M., Draud, S. L., Dyson, K., Ellers, J., Espinosa, C. I., Essi, L., Falahati-Anbaran, M., Falcão, J. C. F., Fargo, H. T., Fellowes, M. D. E., Fitzpatrick, R. M., Flaherty, L. E., Flood, P. J., Flores, M. F., Fornoni, J., Foster, A. G., Frost, C. J., Fuentes, T. L., Fulkerson, J. R., Gagnon, E., Garbsch, F., Garroway, C. J., Gerstein, A. C., Giasson, M. M., Girdler, E. B., Gkelis, S., Godsoe, W., Golemiec, A. M., Golemiec, M., González-Lagos, C., Gorton, A. J., Gotanda, K. M., Granath, G., Greiner, S., Griffiths, J. S., Grilo, F., Gundel, P. E., Hamilton, B., Hardin, J. M., He, T., Heard, S. B., Henriques, A. F., Hernández-Poveda, M., Hetherington-Rauth, M. C., Hill, S. J., Hochuli, D. F., Hodgins, K. A., Hood, G. R., Hopkins, G. R., Hovanes, K. A., Howard, A. R., Hubbard, S. C., Ibarra-Cerdeña, C. N., Iñiguez-Armijos, C., Jara-Arancio, P., Jarrett, B. J. M., Jeannot, M., Jiménez-Lobato, V., Johnson, M., Johnson, O., Johnson, P. P., Johnson, R., Josephson, M. P., Jung, M. C., Just, M. G., Kahilainen, A., Kailing, O. S., Kariñho-Betancourt, E., Karousou, R., Kirn, L. A., Kirschbaum, A., Laine, A.-L., LaMontagne, J. M., Lampei, C., Lara, C., Larson, E. L., Lázaro-Lobo, A., Le, J. H., Leandro, D. S., Lee, C., Lei, Y., León, C. A., Lequerica Tamara, M. E., Levesque, D. C., Liao, W.-J., Ljubotina, M., Locke, H., Lockett, M. T., Longo, T. C., Lundholm, J. T., MacGillavry, T., Mackin, C. R., Mahmoud, A. R., Manju, I. A., Mariën, J., Martínez, D. N., Martínez-Bartolomé, M., Meineke, E. K., Mendoza-Arroyo, W., Merritt, T. J. S., Merritt, L. E. L., Migiani, G., Minor, E. S., Mitchell, N., Mohammadi Bazargani, M., Moles, A. T., Monk, J. D., Moore, C. M., Morales-Morales, P. A., Moyers, B. T., Muñoz-Rojas, M., Munshi-South, J., Murphy, S. M., Murúa, M. M., Neila, M., Nikolaidis, O., Njunjić, I., Nosko, P., Núñez-Farfán, J., Ohgushi, T., Olsen, K. M., Opedal, Ø. H., Ornelas, C., Parachnowitsch, A. L., Paratore, A. S., Parody-Merino, A. M., Paule, J., Paulo, O. S., Pena, J. C., Pfeiffer, V. W., Pinho, P., Piot, A., Porth, I. M., Poulos, N., Puentes, A., Qu, J., Quintero-Vallejo, E., Raciti, S. M., Raeymaekers, J. A. M., Raveala, K. M., Rennison, D. J., Ribeiro, M. C., Richardson, J. L., Rivas-Torres, G., Rivera, B. J., Roddy, A. B., Rodriguez-Muñoz, E., Román, J. R., Rossi, L. S., Rowntree, J. K., Ryan, T. J., Salinas, S., Sanders, N. J., Santiago-Rosario, L. Y., Savage, A. M., Scheepens, J. F., Schilthuizen, M., Schneider, A. C., Scholier, T., Scott, J. L., Shaheed, S. A., Shefferson, R. P., Shepard, C. A., Shykoff, J. A., Silveira, G., Smith, A. D., Solis-Gabriel, L., Soro, A., Spellman, K. V., Whitney, K. S., Starke-Ottich, I., Stephan, J. G., Stephens, J. D., Szulc, J., Szulkin, M., Tack, A. J. M., Tamburrino, Í., Tate, T. D., Tergemina, E., Theodorou, P., Thompson, K. A., Threlfall, C. G., Tinghitella, R. M., Toledo-Chelala, L., Tong, X., Uroy, L., Utsumi, S., Vandegehuchte, M. L., VanWallendael, A., Vidal, P. M., Wadgymar, S. M., Wang, A.-Y., Wang, N., Warbrick, M. L., Whitney, K. D., Wiesmeier, M., Wiles, J. T., Wu, J., Xirocostas, Z. A., Yan, Z., Yao, J., Yoder, J. B., Yoshida, O., Zhang, J., Zhao, Z., Ziter, C. D., Zuellig, M. P., Zufall, R. A., Zurita, J. E., Zytynska, S. E. & Johnson, M. T. J. Global urban environmental change drives adaptation in white clover. Science 375, 1275–1281 (2022).

Zupok, A., Kozul, D., Schöttler, M. A., Niehörster, J., Garbsch, F., Liere, K., Fischer, A., Zoschke, R., Malinova, I., Bock, R. & Greiner, S. A photosynthesis operon in the chloroplast genome drives speciation in evening primroses. The Plant Cell 33, 2583–2601 (2021).

Malinova, I., Zupok, A., Massouh, A., Schöttler, M. A., Meyer, E. H., Yaneva-Roder, L., Szymanski, W. G., Rößner, M., Ruf, S., Bock, R. & Greiner, S. Correction of Frameshift Mutations in the atpB Gene by Translational Recoding in Chloroplasts of Oenothera and Tobacco. The Plant Cell 33, 1682–1705 (2021).

Greiner, S., Golczyk, H., Malinova, I., Pellizzer, T., Bock, R., Börner, T. & Herrmann, R. G. Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development. The Plant Journal 102, 730–746 (2020).

Greiner, S., Lehwark, P. & Bock, R. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47, W59–W64 (2019).

Bdolach, E., Prusty, M. R., Faigenboim-Doron, A., Filichkin, T., Helgerson, L., Schmid, K. J., Greiner, S. & Fridman, E. Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley. Plant, Cell and Environment 42, 3105–3120 (2019).

Hollister, J. D., Greiner, S., Johnson, M. T. J. & Wright, S. I. Hybridization and a loss of sex shape genome-wide diversity and the origin of species in the evening primroses (Oenothera, Onagraceae). New Phytologist 224, 1372–1380 (2019).

Leebens-Mack, J. H., Barker, M. S., Carpenter, E. J., Deyholos, M. K., Gitzendanner, M. A., Graham, S. W., Grosse, I., Li, Z., Melkonian, M., Mirarab, S., Porsch, M., Quint, M., Rensing, S. A., Soltis, D. E., Soltis, P. S., Stevenson, D. W., Ullrich, K. K., Wickett, N. J., DeGironimo, L., Edger, P. P., Jordon-Thaden, I. E., Joya, S., Liu, T., Melkonian, B., Miles, N. W., Pokorny, L., Quigley, C., Thomas, P., Villarreal, J. C., Augustin, M. M., Barrett, M. D., Baucom, R. S., Beerling, D. J., Benstein, R. M., Biffin, E., Brockington, S. F., Burge, D. O., Burris, J. N., Burris, K. P., Burtet-Sarramegna, V., Caicedo, A. L., Cannon, S. B., Çebi, Z., Chang, Y., Chater, C., Cheeseman, J. M., Chen, T., Clarke, N. D., Clayton, H., Covshoff, S., Crandall-Stotler, B. J., Cross, H., dePamphilis, C. W., Der, J. P., Determann, R., Dickson, R. C., Stilio, D., S., V., Ellis, S., Fast, E., Feja, N., Field, K. J., Filatov, D. A., Finnegan, P. M., Floyd, S. K., Fogliani, B., García, N., Gâteblé, G., Godden, G. T., Goh, F. (Q. Y., Greiner, S., Harkess, A., Heaney, J. M., Helliwell, K. E., Heyduk, K., Hibberd, J. M., Hodel, R. G. J., Hollingsworth, P. M., Johnson, M. T. J., Jost, R., Joyce, B., Kapralov, M. V., Kazamia, E., Kellogg, E. A., Koch, M. A., Von Konrat, M., Könyves, K., Kutchan, T. M., Lam, V., Larsson, A., Leitch, A. R., Lentz, R., Li, F.-W., Lowe, A. J., Ludwig, M., Manos, P. S., Mavrodiev, E., McCormick, M. K., McKain, M., McLellan, T., McNeal, J. R., Miller, R. E., Nelson, M. N., Peng, Y., Ralph, P., Real, D., Riggins, C. W., Ruhsam, M., Sage, R. F., Sakai, A. K., Scascitella, M., Schilling, E. E., Schlösser, E.-M., Sederoff, H., Servick, S., Sessa, E. B., Shaw, A. J., Shaw, S. W., Sigel, E. M., Skema, C., Smith, A. G., Smithson, A., Stewart, C. N., Stinchcombe, J. R., Szövényi, P., Tate, J. A., Tiebel, H., Trapnell, D., Villegente, M., Wang, C.-N., Weller, S. G., Wenzel, M., Weststrand, S., Westwood, J. H., Whigham, D. F., Wu, S., Wulff, A. S., Yang, Y., Zhu, D., Zhuang, C., Zuidof, J., Chase, M. W., Pires, J. C., Rothfels, C. J., Yu, J., Chen, C., Chen, L., Cheng, S., Li, J., Li, R., Li, X., Lu, H., Ou, Y., Sun, X., Tan, X., Tang, J., Tian, Z., Wang, F., Wang, J., Wei, X., Xu, X., Yan, Z., Yang, F., Zhong, X., Zhou, F., Zhu, Y., Zhang, Y., Ayyampalayam, S., Barkman, T. J., Nguyen, N.-phuong, Matasci, N., Nelson, D. R., Sayyari, E., Wafula, E. K., Walls, R. L., Warnow, T., An, H., Arrigo, N., Baniaga, A. E., Galuska, S., Jorgensen, S. A., Kidder, T. I., Kong, H., Lu-Irving, P., Marx, H. E., Qi, X., Reardon, C. R., Sutherland, B. L., Tiley, G. P., Welles, S. R., Yu, R., Zhan, S., Gramzow, L., Theißen, G., Wong, G. K.-S. & Initiative, O. T. P. T. One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574, 679–685 (2019).

Lehwark, P. & Greiner, S. GB2sequin-A file converter preparing custom GenBank files for database submission. Genomics 111, 759–761 (2019).

Sobanski, J., Giavalisco, P., Fischer, A., Kreiner, J. M., Walther, D., Schöttler, M. A., Pellizzer, T., Golczyk, H., Obata, T., Bock, R., Sears, B. B. & Greiner, S. Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 116, 5665–5674 (2019).

Tillich, M., Lehwark, P., Pellizzer, T., Ulbricht-Jones, E. S., Fischer, A., Bock, R. & Greiner, S. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45, W6–W11 (2017).

Massouh, A., Schubert, J., Yaneva-Roder, L., Ulbricht-Jones, E. S., Zupok, A., Johnson, M. T. J., Wright, S. I., Pellizer, T., Sobanski, J., Bock, R. & Greiner, S. Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera. The Plant Cell 28, 911–929 (2016).

Agren, J. A., Greiner, S., Johnson, M. T. J. & Wright, S. I. No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69, 1053–1062 (2015).

Hollister, J. D., Greiner, S., Wang, W., Wang, J., Zhang, Y., Wong, G. K.-S., Wright, S. I. & Johnson, M. T. J. Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera. Molecular Biology and Evolution 32, 896–905 (2015).

Greiner, S., Sobanski, J. & Bock, R. Why are most organelle genomes transmitted maternally? Bioessays 37, 80–94 (2015).

Golczyk, H., Greiner, S., Wanner, G., Weihe, A., Bock, R., Börner, T. & Herrmann, R. G. Chloroplast DNA in mature and senescing leaves - a reappraisal. The Plant Cell 26, 847–854 (2014).

Golczyk, H., Massouh, A. & Greiner, S. Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses. The Plant Cell 26, 1280–1293 (2014).