Publications of A. R. Fernie

Journal Article (1023)

841.
Journal Article
Matas, A. J.; Yeats, T. H.; Buda, G. J.; Zheng, Y.; Chatterjee, S.; Tohge, T.; Ponnala, L.; Adato, A.; Aharoni, A.; Stark, R. et al.; Fernie, A. R.; Fei, Z.; Giovannoni, J. J.; Rose, J. K. C.: Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation. The Plant Cell 23 (11), pp. 3893 - 3910 (2011)
842.
Journal Article
Meitzel, T.; Radchuk, R.; Nunes-Nesi, A.; Fernie, A. R.; Link, W.; Weschke, W.; Weber, H.: Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development. Plant Journal 65 (4), pp. 517 - 531 (2011)
843.
Journal Article
Michaeli, S.; Fait, A.; Lagor, K.; Nunes-Nesi, A.; Grillich, N.; Yellin, A.; Bar, D.; Khan, M.; Fernie, A. R.; Turano, F. J. et al.; Fromm, H.: A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism. The Plant Journal 67 (3), pp. 485 - 498 (2011)
844.
Journal Article
Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), pp. 895 - 910 (2011)
845.
Journal Article
Nafati, M.; Cheniclet, C.; Hernould, M.; Do, P. T.; Fernie, A. R.; Chevalier, C.; Gevaudant, F.: The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth. The Plant Journal 65 (4), pp. 543 - 556 (2011)
846.
Journal Article
Nunes-Nesi, A.; Araujo, W. L.; Fernie, A. R.: Targeting Mitochondrial Metabolism and Machinery as a Means to Enhance Photosynthesis. Plant Physiology 155 (1), pp. 101 - 107 (2011)
847.
Journal Article
Obata, T.; Matthes, A.; Koszior, S.; Lehmann, M.; Araujo, W. L.; Bock, R.; Sweetlove, L. J.; Fernie, A. R.: Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings. Phytochemistry 72 (10), pp. 1081 - 1091 (2011)
848.
Journal Article
Osorio, S.; Alba, R.; Damasceno, C. M. B.; Lopez-Casado, G.; Lohse, M.; Zanor, M. I.; Tohge, T.; Usadel, B.; Rose, J. K. C.; Fei, Z. J. et al.; Giovannoni, J. J.; Fernie, A. R.: Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157 (1), pp. 405 - 425 (2011)
849.
Journal Article
Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), pp. 2855 - 2873 (2011)
850.
Journal Article
Quadrana, L.; Rodriguez, M. C.; Lopez, M.; Bermudez, L.; Nunes-Nesi, A.; Fernie, A. R.; Descalzo, A.; Asis, R.; Rossi, M.; Asurmendi, S. et al.; Carrari, F.: Coupling Virus-Induced Gene Silencing to Exogenous Green Fluorescence Protein Expression Provides a Highly Efficient System for Functional Genomics in Arabidopsis and across All Stages of Tomato Fruit Development. Plant Physiology 156 (3), pp. 1278 - 1291 (2011)
851.
Journal Article
Rashke, M.; Boycheva, S.; Crèvecoeur, M.; Nunes-Nesi, A.; Witt, S.; Fernie, A. R.; Amrhein, N.; Fitzpatrick, T. B.: Enhanced levels of vitamin B6 increase aerial organ size and positively affect stress tolerance in Arabidopsis. The Plant Journal 66 (3), pp. 414 - 432 (2011)
852.
Journal Article
Reiland, S.; Grossmann, J.; Baerenfaller, K.; Gehrig, P.; Nunes-Nesi, A.; Fernie, A. R.; Gruissem, W.; Baginsky, S.: Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.). Proteomics 11 (9), pp. 1751 - 1763 (2011)
853.
Journal Article
Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)
854.
Journal Article
Skirycz, A.; Memmi, S.; de Bodt, S.; Maleux, K.; Obata, T.; Fernie, A. R.; Devreese, B.; Inze, D.: A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10 (3), pp. 1018 - 1029 (2011)
855.
Journal Article
Steinbrenner, A. D.; Gomez, S.; Osorio, S.; Fernie, A. R.; Orians, C. M.: Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37 (12), pp. 1294 - 1303 (2011)
856.
Journal Article
Steinhauser, M.-C.; Steinhauser, D.; Gibon, Y.; Bolger, M.; Arrivault, S.; Usadel, B.; Zamir, D.; Fernie, A. R.; Stitt, M.: Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157 (3), pp. 998 - 1014 (2011)
857.
Journal Article
Timm, S.; Florian, A.; Jahnke, K.; Nunes-Nesi, A.; Fernie, A. R.; Bauwe, H.: The Hydroxypyruvate-Reducing System in Arabidopsis: Multiple Enzymes for the Same End. Plant Physiology 155 (2), pp. 694 - 705 (2011)
858.
Journal Article
Tohge, T.; Mettler, T.; Arrivault, S.; Carroll, A. J.; Stitt, M.; Fernie, A. R.: From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, p. 61 (2011)
859.
Journal Article
Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), pp. 1469 - 1482 (2011)
860.
Journal Article
Zabalza, A.; Orcaray, L.; Igal, M.; Schauer, N.; Fernie, A. R.; Geigenberger, P.; van Dongen, J. T.; Royuela, M.: Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling. Journal of Plant Physiology 168 (13), pp. 1568 - 1575 (2011)
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