Publications of J. Selbig

Daub, C. O.; Steuer, R.; Selbig, J.; Kloska, S.: Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinformatics 5, p. 118 (2004)

Gibon, Y.; Blaesing, O. E.; Hannemann, J.; Carillo, P.; Hoehne, M.; Hendriks, J. H. M.; Palacios, N.; Cross, J.; Selbig, J.; Stitt, M.: A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16 (12), pp. 3304 - 3325 (2004)

Luedemann, A.; Weicht, D.; Selbig, J.; Kopka, J.: PaVESy: Pathway visualization and editing system. Bioinformatics 20 (16), pp. 2841 - 2844 (2004)

Scholz, M.; Gatzek, S.; Sterling, A.; Fiehn, O.; Selbig, J.: Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinformatics 20 (15), pp. 2447 - 2454 (2004)

Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), pp. 1928 - 1939 (2004)

Thimm, O.; Blaesing, O.; Gibon, Y.; Nagel, A.; Meyer, S.; Krueger, P.; Selbig, J.; Mueller, L. A.; Rhee, S. Y.; Stitt, M.: MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37 (6), pp. 914 - 939 (2004)

Beerenwinkel, N.; Daumer, M.; Oette, M.; Korn, K.; Hoffmann, D.; Kaiser, R.; Lengauer, T.; Selbig, J.; Walter, H.: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Research 31 (13), pp. 3850 - 3855 (2003)

Beerenwinkel, N.; Lengauer, T.; Daumer, M.; Kaiser, R.; Walter, H.; Korn, K.; Hoffmann, D.; Selbig, J.: Methods for optimizing antiviral combination therapies. Bioinformatics 19 Suppl. 1, pp. I16 - I25 (2003)

Daub, C. O.; Kloska, S.; Selbig, J.: MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinformatics 19 (17), pp. 2332 - 2333 (2003)

Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), pp. 989 - 993 (2003)

Weckwerth, W.; Selbig, J.: Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information. Biochemical and Biophysical Research Communications 307 (3), pp. 516 - 521 (2003)

Wolf, K.; Walter, H.; Beerenwinkel, N.; Keulen, W.; Kaiser, R.; Hoffmann, D.; Lengauer, T.; Selbig, J.; Vandamme, A.-M.; Korn, K. et al.; Schmidt, B.: Tenofovir resistance and resensitization. Antimicrobial Agents and Chemotherapy 47 (11), pp. 3478 - 3484 (2003)

Beerenwinkel, N.; Schmidt, B.; Walter, H.; Kaiser, R.; Lengauer, T.; Hoffmann, D.; Korn, K.; Selbig, J.: Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proceedings of the National Academy of Sciences of the United States of America 99 (12), pp. 8271 - 8276 (2002)

Wickert, L.; Selbig, J.: Structural analysis of the DNA-binding domain of alternatively spliced steroid receptors. Journal of Endocrinology 173 (3), pp. 429 - 436 (2002)

Beerenwinkel, N.; Lengauer, T.; Selbig, J.; Schmidt, B.; Walter, H.; Korn, K.; Kaiser, R.; Hoffmann, D.: Geno2pheno: Interpreting genotypic HIV drug resistance tests. IEEE Intelligent Systems 16 (6), pp. 35 - 41 (2001)

Wickert, L.; Selbig, J.; Watzka, M.; Stoffel-Wagner, B.; Schramm, J.; Bidlingmaier, F.; Ludwig, M.: Differential mRNA expression of the two mineralocorticoid receptor splice variants within the human brain: Structure analysis of their different DNA binding domains. Journal of Neuroendocrinology 12 (9), pp. 867 - 873 (2000)

Selbig, J.; Mevissen, T.; Lengauer, T.: Decision free-based formation of consensus protein secondary structure prediction. Bioinformatics 15 (12), pp. 1039 - 1046 (1999)

Hartmann, S.; Selbig, J.: Introductory Bioinformatics. Books on Demand, Norderstedt, GER (2009), 260 pp.

Groth, D.; Hartmann, S.; Klie, S.; Selbig, J.: Principal components analysis. In: Methods in Molecular Biology, Vol. 930, pp. 527 - 547 (2013)

Redestig, H.; Szymanski, J.; Hirai, M. Y.; Selbig, J.; Willmitzer, L.; Saito, K.; Nikoloski, Z.: Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)