Publications of J. Selbig

Beerenwinkel, N.; Rahnenfuhrer, J.; Kaiser, R.; Hoffmann, D.; Selbig, J.; Lengauer, T.: Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinformatics 21 (9), pp. 2106 - 2107 (2005)

Beerenwinkel, N.; Sing, T.; Lengauer, T.; Rahnenfuhrer, J.; Roomp, K.; Savenkov, I.; Fischer, R.; Hoffmann, D.; Selbig, J.; Korn, K. et al.; Walter, H.; Berg, T.; Braun, P.; Fatkenheuer, G.; Oette, M.; Rockstroh, J.; Kupfer, B.; Kaiser, R.; Daumer, M.: Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinformatics 21 (21), pp. 3943 - 3950 (2005)

Hummel, J.; Keshvari, N.; Weckwerth, W.; Selbig, J.: Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinformatics 6, p. 164 (2005)

Morgenthal, K.; Wienkoop, S.; Scholz, M.; Selbig, J.; Weckwerth, W.: Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1 (2), pp. 109 - 121 (2005)

Scholz, M.; Kaplan, F.; Guy, C. L.; Kopka, J.; Selbig, J.: Non-linear PCA: a missing data approach. Bioinformatics 21 (20), pp. 3887 - 3895 (2005)

Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)

Daub, C. O.; Steuer, R.; Selbig, J.; Kloska, S.: Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinformatics 5, p. 118 (2004)

Gibon, Y.; Blaesing, O. E.; Hannemann, J.; Carillo, P.; Hoehne, M.; Hendriks, J. H. M.; Palacios, N.; Cross, J.; Selbig, J.; Stitt, M.: A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16 (12), pp. 3304 - 3325 (2004)

Luedemann, A.; Weicht, D.; Selbig, J.; Kopka, J.: PaVESy: Pathway visualization and editing system. Bioinformatics 20 (16), pp. 2841 - 2844 (2004)

Scholz, M.; Gatzek, S.; Sterling, A.; Fiehn, O.; Selbig, J.: Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinformatics 20 (15), pp. 2447 - 2454 (2004)

Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), pp. 1928 - 1939 (2004)

Thimm, O.; Blaesing, O.; Gibon, Y.; Nagel, A.; Meyer, S.; Krueger, P.; Selbig, J.; Mueller, L. A.; Rhee, S. Y.; Stitt, M.: MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant Journal 37 (6), pp. 914 - 939 (2004)

Beerenwinkel, N.; Daumer, M.; Oette, M.; Korn, K.; Hoffmann, D.; Kaiser, R.; Lengauer, T.; Selbig, J.; Walter, H.: Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Research 31 (13), pp. 3850 - 3855 (2003)

Beerenwinkel, N.; Lengauer, T.; Daumer, M.; Kaiser, R.; Walter, H.; Korn, K.; Hoffmann, D.; Selbig, J.: Methods for optimizing antiviral combination therapies. Bioinformatics 19 Suppl. 1, pp. I16 - I25 (2003)

Daub, C. O.; Kloska, S.; Selbig, J.: MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinformatics 19 (17), pp. 2332 - 2333 (2003)

Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), pp. 989 - 993 (2003)

Weckwerth, W.; Selbig, J.: Scoring and identifying organism-specific functional patterns and putative phosphorylation sites in protein sequences using mutual information. Biochemical and Biophysical Research Communications 307 (3), pp. 516 - 521 (2003)

Wolf, K.; Walter, H.; Beerenwinkel, N.; Keulen, W.; Kaiser, R.; Hoffmann, D.; Lengauer, T.; Selbig, J.; Vandamme, A.-M.; Korn, K. et al.; Schmidt, B.: Tenofovir resistance and resensitization. Antimicrobial Agents and Chemotherapy 47 (11), pp. 3478 - 3484 (2003)

Beerenwinkel, N.; Schmidt, B.; Walter, H.; Kaiser, R.; Lengauer, T.; Hoffmann, D.; Korn, K.; Selbig, J.: Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proceedings of the National Academy of Sciences of the United States of America 99 (12), pp. 8271 - 8276 (2002)

Wickert, L.; Selbig, J.: Structural analysis of the DNA-binding domain of alternatively spliced steroid receptors. Journal of Endocrinology 173 (3), pp. 429 - 436 (2002)