Publications of Z. Nikoloski
All genres
Journal Article (193)
161.
Journal Article
109 (2), pp. 186 - 191 (2012)
Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 162.
Journal Article
3 (1-2), pp. 45 - 53 (2012)
Assessing the significance of knockout cascades in metabolic networks. Journal of Computational Interdisciplinary Sciences 163.
Journal Article
3, p. 1319 (2012)
Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 164.
Journal Article
287 (14), pp. 11122 - 11131 (2012)
Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 165.
Journal Article
3, p. 217 (2012)
A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 166.
Journal Article
6 (1), p. 16 (2012)
Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 167.
Journal Article
3, p. 249 (2012)
Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 168.
Journal Article
3, p. 115 (2012)
The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 169.
Journal Article
7 (9), pp. 1095 - 1102 (2012)
Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana. Plant Signaling & Behavior 170.
Journal Article
8 (4), pp. 1121 - 1127 (2012)
PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Molecular BioSystems 171.
Journal Article
159 (4), pp. 1713 - 1729 (2012)
Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior. Plant Physiology 172.
Journal Article
314, pp. 192 - 203 (2012)
Restricted cooperative games on metabolic networks reveal functionally important reactions. Journal of Theoretical Biology 173.
Journal Article
6 (1), p. 148 (2012)
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 174.
Journal Article
8 (3), p. e1002612 (2012)
Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations. PLoS Genetics 175.
Journal Article
27 (10), pp. 1397 - 1403 (2011)
Mass-balanced randomization of metabolic networks. Bioinformatics 176.
Journal Article
9 (71), pp. 1168 - 1176 (2011)
Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 177.
Journal Article
27 (19), pp. 2761 - 2762 (2011)
JMassBalance: mass-balanced randomization and analysis of metabolic networks. Bioinformatics 178.
Journal Article
103 (2), pp. 212 - 223 (2011)
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosystems 179.
Journal Article
12, p. 292 (2011)
Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 180.
Journal Article
107 (5), p. 054101 (2011)
Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters