Publications of B. Usadel

Journal Article (74)

41.
Journal Article
Hannemann, J.; Poorter, H.; Usadel, B.; Blaesing, O. E.; Finck, A.; Tardieu, F.; Atkin, O. K.; Pons, T.; Stitt, M.; Gibon, Y.: Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment 32 (9), pp. 1185 - 1200 (2009)
42.
Journal Article
Howell, K. A.; Narsai, R.; Carroll, A.; Ivanova, A.; Lohse, M.; Usadel, B.; Millar, A. H.; Whelan, J.: Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process. Plant Physiology 149 (2), pp. 961 - 980 (2009)
43.
Journal Article
Mutwil, M.; Ruprecht, C.; Giorgi, F. M.; Bringmann, M.; Usadel, B.; Persson, S.: Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis. Molecular Plant 2 (5), pp. 1015 - 1024 (2009)
44.
Journal Article
Piques, M.; Schulze, W. X.; Hoehne, M.; Usadel, B.; Gibon, Y.; Rohwer, J.; Stitt, M.: Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Molecular Systems Biology 5, p. 314 (2009)
45.
Journal Article
Rotter, A.; Camps, C.; Lohse, M.; Kappel, C.; Pilati, S.; Hren, M.; Stitt, M.; Coutos-Thevenot, P.; Moser, C.; Usadel, B. et al.; Delrot, S.; Gruden, K.: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine. BMC Plant Biology 9, p. 104 (2009)
46.
Journal Article
Sulpice, R.; Pyl, E. T.; Ishihara, H.; Trenkamp, S.; Steinfath, M.; Witucka-Wall, H.; Gibon, Y.; Usadel, B.; Poree, F.; Piques, M. C. et al.; von Korff, M.; Steinhauser, M.-C.; Keurentjes, J. J. B.; Guenther, M.; Hoehne, M.; Selbig, J.; Fernie, A. R.; Altmann, T.; Stitt, M.: Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106 (25), pp. 10348 - 10353 (2009)
47.
Journal Article
Usadel, B.; Poree, F.; Nagel, A.; Lohse, M.; Czedik-Eysenberg, A.; Stitt, M.: A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. Plant Cell and Environment 32 (9), pp. 1211 - 1229 (2009)
48.
Journal Article
Wang, H.; Schauer, N.; Usadel, B.; Frasse, P.; Zouine, M.; Hernould, M.; Latche, A.; Pech, J. C.; Fernie, A. R.; Bouzayen, M.: Regulatory Features Underlying Pollination-Dependent and -Independent Tomato Fruit Set Revealed by Transcript and Primary Metabolite Profiling. The Plant Cell 21 (5), pp. 1428 - 1452 (2009)
49.
Journal Article
Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)
50.
Journal Article
Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)
51.
Journal Article
Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)
52.
Journal Article
Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)
53.
Journal Article
Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)
54.
Journal Article
May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)
55.
Journal Article
Rautengarten, C.; Usadel, B.; Neumetzler, L.; Hartmann, J.; Buessis, D.; Altmann, T.: A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats. Plant Journal 54 (3), pp. 466 - 480 (2008)
56.
Journal Article
Sreenivasulu, N.; Usadel, B.; Winter, A.; Radchuk, V.; Scholz, U.; Stein, N.; Weschke, W.; Strickert, M.; Close, T. J.; Stitt, M. et al.; Graner, A.; Wobus, U.: Barley grain maturation and germination: Metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiology 146 (4), pp. 1738 - 1758 (2008)
57.
Journal Article
Usadel, B.; Blaesing, O. E.; Gibon, Y.; Retzlaff, K.; Hoehne, M.; Guenther, M.; Stitt, M.: Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiology 146 (4), pp. 1834 - 1861 (2008)
58.
Journal Article
Morcuende, R.; Bari, R.; Gibon, Y.; Zheng, W.; Pant, B. D.; Blaesing, O.; Usadel, B.; Czechowski, T.; Udvardi, M. K.; Stitt, M. et al.; Scheible, W.-R.: Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell and Environment 30 (1), pp. 85 - 112 (2007)
59.
Journal Article
Osuna, D.; Usadel, B.; Morcuende, R.; Gibon, Y.; Blaesing, O. E.; Hoehne, M.; Gunter, M.; Kamlage, B.; Trethewey, R.; Scheible, W.-R. et al.; Stitt, M.: Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant Journal 49 (3), pp. 463 - 491 (2007)
60.
Journal Article
Rotter, A.; Usadel, B.; Baebler, S.; Stitt, M.; Gruden, K.: Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species. Plant Methods 3, p. 10 (2007)
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