Publications of W. Weckwerth

Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, p. 216 (2007)

Kruger, R.; Wolschin, F.; Weckwerth, W.; Bettmer, J.; Lehmann, W. D.: Plant protein phosphorylation monitored by capillary liquid chromatography-element mass spectrometry. Biochemical and Biophysical Research Communications 355 (1), pp. 89 - 96 (2007)

Larrainzar, E.; Wienkoop, S.; Weckwerth, W.; Ladrera, R.; Arrese-Igor, C.; Gonzalez, E. M.: Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress. Plant Physiology 144 (3), pp. 1495 - 1507 (2007)

Lehmann, W. D.; Kruger, R.; Salek, M.; Hung, C. W.; Wolschin, F.; Weckwerth, W.: Neutral loss-based phosphopeptide recognition: A collection of caveats. Journal of Proteome Research 6 (7), pp. 2866 - 2873 (2007)

Mueller-Linow, M.; Weckwerth, W.; Huett, M. T.: Consistency analysis of metabolic correlation networks. BMC Systems Biology 1, p. 44 (2007)

Reumann, S.; Babujee, L.; Ma, C.; Wienkoop, S.; Siemsen, T.; Antonicelli, G. E.; Rasche, N.; Luder, F.; Weckwerth, W.; Jahn, O.: Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell 19 (10), pp. 3170 - 3193 (2007)

Glinski, M.; Weckwerth, W.: The role of mass spectrometry in plant systems biology. Mass Spectrometry Reviews 25 (2), pp. 173 - 214 (2006)

Morgenthal, K.; Weckwerth, W.; Steuer, R.: Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation. Biosystems 83 (2-3), pp. 108 - 117 (2006)

Wienkoop, S.; Larrainzar, E.; Niemann, M.; Gonzalez, E. M.; Lehmann, U.; Weckwerth, W.: Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics. Journal of Separation Science 29 (18), pp. 2793 - 2801 (2006)

Wienkoop, S.; Weckwerth, W.: Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. Journal of Experimental Botany 57 (7), pp. 1529 - 1535 (2006)

Wolschin, F.; Chen, Y.; Weckwerth, W.: Multisite Protein Phosphorylation in Plants - Technical Considerations and Biological Implications. Current Proteomics 3 (4), pp. 217 - 231 (2006)

Boldt, R.; Edner, C.; Kolukisaoglu, U.; Hagemann, M.; Weckwerth, W.; Wienkoop, S.; Morgenthal, K.; Bauwe, H.: D-GLYCERATE 3-KINASE, the last unknown enzyme in the photorespiratory cycle in Arabidopsis, belongs to a novel kinase family. Plant Cell 17 (8), pp. 2413 - 2420 (2005)

Glinski, M.; Weckwerth, W.: Differential Multisite Phosphorylation of the Trehalose-6-phosphate Synthase Gene Family in Arabidopsis thaliana: A Mass Spectrometry-based Process for Multiparallel Peptide Library Phosphorylation Analysis. Molecular & Cellular Proteomics 4 (10), pp. 1614 - 1625 (2005)

Hummel, J.; Keshvari, N.; Weckwerth, W.; Selbig, J.: Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinformatics 6, p. 164 (2005)

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)

Morgenthal, K.; Wienkoop, S.; Scholz, M.; Selbig, J.; Weckwerth, W.: Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1 (2), pp. 109 - 121 (2005)

Weckwerth, W.; Morgenthal, K.: Metabolomics: from pattern recognition to biological interpretation. Drug Discovery Today 10 (22), pp. 1551 - 1558 (2005)

Wolschin, F.; Lehmann, U.; Glinski, M.; Weckwerth, W.: An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS(2)/MS(3). Rapid Communications in Mass Spectrometry 19 (24), pp. 3626 - 3632 (2005)

Wolschin, F.; Weckwerth, W.: Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods 1 (1), p. 9 (2005)

Wolschin, F.; Wienkoop, S.; Weckwerth, W.: Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 5 (17), pp. 4389 - 4397 (2005)