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Journal Article (151)
141.
Journal Article
104 (1), pp. 1 - 8 (2011)
Complexity of automated gene annotation. Biosystems 142.
Journal Article
2, p. 23 (2011)
Large-scale co-expression approach to dissect secondary cell wall formation across plant species. Frontiers in Plant Science 143.
Journal Article
17, pp. 1 - 18 (2010)
Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 144.
Journal Article
267 (1), pp. 7 - 14 (2010)
Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 145.
Journal Article
26 (18), pp. i582 - i588 (2010)
A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana. Bioinformatics 146.
Journal Article
37 (9), p. e66 (2009)
Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 147.
Journal Article
4 (10), p. e7441 (2009)
Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli - A Systems Approach. PLoS One 148.
Journal Article
20, pp. 135 - 148 (2008)
Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 149.
Journal Article
20 (2), pp. 172 - 188 (2008)
On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 150.
Journal Article
254 (4), pp. 807 - 816 (2008)
Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 151.
Journal Article
5251, pp. 99 - 112 (2008)
Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 Book Chapter (6)
152.
Book Chapter
Regression-Based Modeling of Complex Plant Traits Based on Metabolomics Data. In: Plant Metabolomics: Methods and Protocols, pp. 321 - 327 (Ed. António, C.). Humana Press, New York (2018)
153.
Book Chapter
1653, pp. 195 - 202. Elsevier, Cambridge, MA (2017)
Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Vol. 154.
Book Chapter
1629, pp. 283 - 295. Springer, heidelberg (2017)
Computational Approaches to Study Gene Regulatory Networks. In: Plant gene Regulatory Networks, Vol. 155.
Book Chapter
Computational Approaches to Dissect and Understand Mechanisms of Adaptation. In: Molecular Mechanisms in Plant Adaptation, pp. 193 - 215. Wiley-Blackwell, Malden (2015)
156.
Book Chapter
The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, pp. 23 - 43 (Eds. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)
157.
Book Chapter
Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)
Conference Paper (3)
158.
Conference Paper
Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. In: Information Processing in Cells and Tissues, pp. 169 - 172. 10th International Conference on Information Processing in Cells and
Tissues (IPCAT), San Diego, CA, September 14, 2015 - September 16, 2015. (2015)
159.
Conference Paper
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. In: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB), pp. I502 - I508. 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) , Basel, SWITZERLAND. (2012)
160.
Conference Paper
Thermodynamic landscapes of randomized large-scale metabolic networks. In: 7th International Workshop on Computational Systems Biology, WCSB 2010, pp. 23 - 26 (Eds. Nykter, M.; Ruusuvuori, P.; Carlberg, C.; Yli-Harja, O.). 7th International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, LUX. Tampere International Center for Signal Processing (2010)