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Journal Article (84)

21.
Journal Article
Poorter, H.; Fiorani, F.; Stitt, M.; Schurr, U.; Finck, A.; Gibon, Y.; Usadel, B.; Munns, R.; Atkin, O. K.; Tardieu, F. et al.; Pons, T. L.: The art of growing plants for experimental purposes: a practical guide for the plant biologist Review. Functional Plant Biology 39 (10-11), pp. 821 - 838 (2012)
22.
Journal Article
Riegler, H.; Herter, T.; Grishkovskaya, I.; Lude, A.; Ryngajllo, M.; Bolger, M. E.; Essigmann, B.; Usadel, B.: Crystal structure and functional characterization of a glucosamine-6-phosphate N-acetyltransferase from Arabidopsis thaliana. Biochemical Journal 443, pp. 427 - 437 (2012)
23.
Journal Article
Vasilevski, A.; Giorgi, F. M.; Bertinetti, L.; Usadel, B.: LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes. Molecular Biosystems 8 (10), pp. 2566 - 2574 (2012)
24.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Osorio, S.; Usadel, B.; Fuentes, D.; Nagy, R.; Balbo, I.; Lehmann, M.; Studart-Witkowski, C.; Tohge, T. et al.; Martinoia, E.; Jordana, X.; DaMatta, F. M.; Fernie, A. R.: Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23 (2), pp. 600 - 627 (2011)
25.
Journal Article
Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), p. e17806 (2011)
26.
Journal Article
Licausi, F.; Giorgi, F. M.; Schmalzlin, E.; Usadel, B.; Perata, P.; van Dongen, J. T.; Geigenberger, P.: HRE-Type Genes Are Regulated by Growth-Related Changes in Internal Oxygen Concentrations During the Normal Development of Potato (Solanum tuberosum) Tubers. Plant & Cell Physiology 52 (11), pp. 1957 - 1972 (2011)
27.
Journal Article
Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), pp. 895 - 910 (2011)
28.
Journal Article
Nagel, A.; Lohse, M.; Bolger, A.; Bolger, A. M.; Stitt, M.; Usadel, B.: Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. Human Vision and Electronic Imaging Xvi 7865, p. 78650h (2011)
29.
Journal Article
Osorio, S.; Alba, R.; Damasceno, C. M. B.; Lopez-Casado, G.; Lohse, M.; Zanor, M. I.; Tohge, T.; Usadel, B.; Rose, J. K. C.; Fei, Z. J. et al.; Giovannoni, J. J.; Fernie, A. R.: Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157 (1), pp. 405 - 425 (2011)
30.
Journal Article
Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), pp. 2855 - 2873 (2011)
31.
Journal Article
Rautengarten, C.; Ebert, B.; Herter, T.; Petzold, C. J.; Ishii, T.; Mukhopadhyay, A.; Usadel, B.; Scheller, H. V.: The Interconversion of UDP-Arabinopyranose and UDP-Arabinofuranose Is Indispensable for Plant Development in Arabidopsis. Plant Cell 23 (4), pp. 1373 - 1390 (2011)
32.
Journal Article
Ryngajllo, M.; Childs, L.; Lohse, M.; Giorgi, F. M.; Lude, A.; Selbig, J.; Usadel, B.: SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data. Frontiers in Plant Science 2, p. 43 (2011)
33.
Journal Article
Steinhauser, M.-C.; Steinhauser, D.; Gibon, Y.; Bolger, M.; Arrivault, S.; Usadel, B.; Zamir, D.; Fernie, A. R.; Stitt, M.: Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157 (3), pp. 998 - 1014 (2011)
34.
Journal Article
Dorn, K. V.; Willmund, F.; Schwarz, C.; Henselmann, C.; Pohl, T.; Hess, B.; Veyel, D.; Usadel, B.; Friedrich, T.; Nickelsen, J. et al.; Schroda, M.: Chloroplast DnaJ-like proteins 3 and 4 (CDJ3/4) from Chlamydomonas reinhardtii contain redox-active Fe-S clusters and interact with stromal HSP70B. Biochemical Journal 427 (2), pp. 205 - 215 (2010)
35.
Journal Article
Giorgi, F. M.; Bolger, A. M.; Lohse, M.; Usadel, B.: Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinformatics 11, p. 553 (2010)
36.
Journal Article
Lohse, M.; Nunes-Nesi, A.; Krueger, P.; Nagel, A.; Hannemann, J.; Giorgi, F. M.; Childs, L.; Osorio, S.; Walther, D.; Selbig, J. et al.; Sreenivasulu, N.; Stitt, M.; Fernie, A. R.; Usadel, B.: Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 153 (2), pp. 642 - 651 (2010)
37.
Journal Article
Muessig, C.; Schroeder, F.; Usadel, B.; Lisso, J.: Structure and putative function of NFX1-like proteins in plants. Plant Biology 12 (3), pp. 381 - 394 (2010)
38.
Journal Article
Mutwil, M.; Usadel, B.; Schuette, M.; Loraine, A.; Ebenhoeh, O.; Persson, S.: Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm. Plant Physiology 152 (1), pp. 29 - 43 (2010)
39.
Journal Article
Nashilevitz, S.; Melamed-Bessudo, C.; Izkovich, Y.; Rogachev, I.; Osorio, S.; Itkin, M.; Adato, A.; Pankratov, I.; Hirschberg, J.; Fernie, A. R. et al.; Wolf, S.; Usadel, B.; Levy, A. A.; Rumeau, D.; Aharoni, A.: An Orange Ripening Mutant Links Plastid NAD(P)H Dehydrogenase Complex Activity to Central and Specialized Metabolism during Tomato Fruit Maturation. The Plant Cell 22 (6), pp. 1977 - 1997 (2010)
40.
Journal Article
Schulze, W. X.; Usadel, B.: Quantitation in Mass-Spectrometry-Based Proteomics. Annual Review of Plant Biology 61, pp. 491 - 516 (2010)
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