Publications of J. Kopka

Sanchez, D. H.; Schwabe, F.; Erban, A.; Udvardi, M. K.; Kopka, J.: Comparative metabolomics of drought acclimation in model and forage legumes. Plant Cell and Environment 35 (1), pp. 136 - 149 (2012)

Siahpoosh, M. R.; Sanchez, D. H.; Schlereth, A.; Scofield, G. N.; Furbank, R. T.; van Dongen, J. T.; Kopka, J.: Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309. Plant Science 182, pp. 101 - 111 (2012)

Clauss, K.; von Roepenack-Lahaye, E.; Boettcher, C.; Roth, M. R.; Welti, R.; Erban, A.; Kopka, J.; Scheel, D.; Milkowski, C.; Strack, D.: Overexpression of Sinapine Esterase BnSCE3 in Oilseed Rape Seeds Triggers Global Changes in Seed Metabolism. Plant Physiology 155 (3), pp. 1127 - 1145 (2011)

Hackenberg, C.; Kern, R.; Huege, J.; Stal, L. J.; Tsuji, Y.; Kopka, J.; Shiraiwa, Y.; Bauwe, H.; Hagemann, M.: Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. The Plant Cell 23 (8), pp. 2978 - 2990 (2011)

Huege, J.; Goetze, J.; Schwarz, D.; Bauwe, H.; Hagemann, M.; Kopka, J.: Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis. PLoS One 6 (1), p. e16278 (2011)

Moing, A.; Aharoni, A.; Biais, B.; Rogachev, I.; Meir, S.; Brodsky, L.; Allwood, J. W.; Erban, A.; Dunn, W. B.; Kay, L. et al.; de Koning, S.; de Vos, R. C. H.; Jonker, H.; Mumm, R.; Deborde, C.; Maucourt, M.; Bernillon, S.; Gibon, Y.; Hansen, T. H.; Husted, S.; Goodacre, R.; Kopka, J.; Schjoerring, J. K.; Rolin, D.; Hall, R. D.: Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytologist 190 (3), pp. 683 - 696 (2011)

Sanchez, D. H.; Pieckenstain, F. L.; Escaray, F.; Erban, A.; Kraemer, U.; Udvardi, M. K.; Kopka, J.: Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis. Plant Cell and Environment 34 (4), pp. 605 - 617 (2011)

Sanchez, D. H.; Pieckenstain, F. L.; Szymanski, J.; Erban, A.; Bromke, M.; Hannah, M. A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics. PLoS One 6 (2), p. e17094 (2011)

Schwarz, D.; Nodop, A.; Huege, J.; Purfurst, S.; Forchhammer, K.; Michel, K. P.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolic and Transcriptomic Phenotyping of Inorganic Carbon Acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiology 155 (4), pp. 1640 - 1655 (2011)

Ebert, B.; Zoller, D.; Erban, A.; Fehrle, I.; Hartmann, J.; Niehl, A.; Kopka, J.; Fisahn, J.: Metabolic profiling of Arabidopsis thaliana epidermal cells. Journal of Experimental Botany 61 (5), pp. 1321 - 1335 (2010)

Girin, T.; El-Kafafi, E. S.; Widiez, T.; Erban, A.; Hubberten, H.-M.; Kopka, J.; Hoefgen, R.; Gojon, A.; Lepetit, M.: Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant. Plant Physiology 153 (3), pp. 1250 - 1260 (2010)

Hofmann, J.; El Ashry, A.; Anwar, S.; Erban, A.; Kopka, J.; Grundler, F.: Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant Journal 62 (6), pp. 1058 - 1071 (2010)

Hummel, J.; Strehmel, N.; Selbig, J.; Walther, D.; Kopka, J.: Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6 (2), pp. 322 - 333 (2010)

Korn, M.; Gärtner, T.; Erban, A.; Kopka, J.; Selbig, J.; Hincha, D. K.: Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition. Molecular Plant 3 (1), pp. 224 - 235 (2010)

Lugan, R.; Niogret, M. F.; Leport, L.; Guegan, J. P.; Larher, F. R.; Savoure, A.; Kopka, J.; Bouchereau, A.: Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte. Plant Journal 64 (2), pp. 215 - 229 (2010)

Parveen, I.; Moorby, J. M.; Fraser, M. D.; Erban, A.; Kopka, J.: Relationship between Grazing Lamb Growth Rate and Blood Plasma Analytes as Profiled by Gas Chromatography with Time-of-Flight Mass Spectrometry (GC-TOF/MS). Journal of Agricultural and Food Chemistry 58 (2), pp. 913 - 917 (2010)

Sanchez, D. H.; Szymanski, J.; Erban, A.; Udvardi, M. K.; Kopka, J.: Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus. Plant Cell and Environment 33 (4), pp. 468 - 480 (2010)

Steinfath, M.; Strehmel, N.; Peters, R.; Schauer, N.; Groth, D.; Hummel, J.; Steup, M.; Selbig, J.; Kopka, J.; Geigenberger, P. et al.; van Dongen, J. T.: Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8 (8), pp. 900 - 911 (2010)

Strassburg, K.; Walther, D.; Takahashi, H.; Kanaya, S.; Kopka, J.: Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14 (3), pp. 249 - 259 (2010)

Strehmel, N.; Praeger, U.; Koenig, C.; Fehrle, I.; Erban, A.; Geyer, M.; Kopka, J.; van Dongen, J. T.: Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact. Postharvest Biology and Technology 56 (2), pp. 109 - 116 (2010)