Publications of J. Kopka

Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), pp. 2310 - 2350 (2014)

Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast RLP24, RPl24a, RLP24b, ARX1, and jjj1 proteins. Plant Signaling & Behavior 9 (3), e28224 (2014)

Schroeder, F.; Lisso, J.; Obata, T.; Erban, A.; Maximova, E.; Giavalisco, P.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Muessig, C.: Consequences of induced brassinosteroid deficiency in Arabidopsis leaves. BMC Plant Biology 14, 309 (2014)

Schwarz, D.; Orf, I.; Kopka, J.; Hagemann, M.: Effects of Inorganic Carbon Limitation on the Metabolome of the Synechocystis sp. PCC 6803 Mutant Defective in glnB Encoding the Central Regulator PII of Cyanobacterial C/N Acclimation. Metabolites 4 (2), pp. 232 - 247 (2014)

Agudelo-Romero, P.; Erban, A.; Sousa, L.; Pais, M. S.; Kopka, J.; Fortes, A. M.: Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars. PLoS One 8 (4), e60422 (2013)

Degenkolbe, T.; Do, P. T.; Kopka, J.; Zuther, E.; Hincha, D. K.; Koehl, K. I.: Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling. PLoS One 8 (5), e63637 (2013)

Do, P. T.; Degenkolbe, T.; Erban, A.; Heyer, A. G.; Kopka, J.; Koehl, K. I.; Hincha, D. K.; Zuther, E.: Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8 (4), e60325 (2013)

Hauf, W.; Schlebusch, M.; Huege, J.; Kopka, J.; Hagemann, M.; Forchhammer, K.: Metabolic Changes in Synechocystis PCC6803 upon Nitrogen-Starvation: Excess NADPH Sustains Polyhydroxybutyrate Accumulation. Metabolites 3, pp. 101 - 118 (2013)

Perez-Delgado, C. M.; Garcia-Calderon, M.; Sanchez, D. H.; Udvardi, M. K.; Kopka, J.; Marquez, A. J.; Betti, M.: Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus. Plant Physiology 162 (4), pp. 1834 - 1848 (2013)

Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiology 163 (4), pp. 1623 - 1639 (2013)

Schwarz, D.; Orf, I.; Kopka, J.; Hagemann, M.: Recent Applications of Metabolomics Toward Cyanobacteria. Metabolites 3, pp. 72 - 100 (2013)

Strehmel, N.; Kopka, J.; Scheel, D.; Böttcher, C.: Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS. Metabolics 10 (2), pp. 324 - 336 (2013)

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)

Anetzberger, C.; Reiger, M.; Fekete, A.; Schell, U.; Stambrau, N.; Plener, L.; Kopka, J.; Schmitt-Kopplin, P.; Hilbi, H.; Jung, K.: Autoinducers act as biological timers in Vibrio harveyi. PLoS One 7 (10), p. e48310 (2012)

Beisser, D.; Grohme, M. A.; Kopka, J.; Frohme, M.; Schill, R. O.; Hengherr, S.; Dandekar, T.; Klau, G. W.; Dittrich, M.; Muller, T.: Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology 6, p. 72 (2012)

Calingacion, M. N.; Boualaphanh, C.; Daygon, V. D.; Anacleto, R.; Sackville Hamilton, R.; Biais, B.; Deborde, C.; Maucourt, M.; Moing, A.; Mumm, R. et al.; de Vos, R. C. H.; Erban, A.; Kopka, J.; Hansen, T. H.; Laursen, K. H.; Schjoerring, J. K.; Hall, R. D.; Fitzgerald, M. A.: A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8 (5), pp. 771 - 783 (2012)

Dunn, W. B.; Erban, A.; Weber, R. J. M.; Creek, D. J.; Brown, M.; Breitling, R.; Hankemeier, T.; Goodacre, R.; Neumann, S.; Kopka, J. et al.; Viant, M. R.: Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics 9 (S1), pp. 44 - 66 (2012)

Fuehrs, H.; Specht, A.; Erban, A.; Kopka, J.; Horst, W. J.: Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. Journal of Experimental Botany 63 (1), pp. 329 - 340 (2012)

Hackenberg, C.; Huege, J.; Engelhardt, A.; Wittink, F.; Laue, M.; Matthijs, H. C.; Kopka, J.; Bauwe, H.; Hagemann, M.: Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158 (Pt 2), pp. 398 - 413 (2012)

Rohloff, J.; Kopka, J.; Erban, A.; Winge, P.; Wilson, R. C.; Bones, A. M.; Davik, J.; Randall, S. K.; Alsheikh, M. K.: Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry). Phytochemistry 77, pp. 99 - 109 (2012)