Publications of Z. Nikoloski

Journal Article (195)

121.
Journal Article
Apelt, F.; Breuer, D.; Nikoloski, Z.; Stitt, M.; Kragler, F.: Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82 (4), pp. 693 - 706 (2015)
122.
Journal Article
Arnold, A.; Sajitz-Hermstein, M.; Nikoloski, Z.: Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10 (2), e0116536 (2015)
123.
Journal Article
Breuer, D.; Nikoloski, Z.: DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, 18267 (2015)
124.
Journal Article
Estevez, S.; Nikoloski, Z.: Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization. PLoS One 10 (7), e0131875 (2015)
125.
Journal Article
Heise, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana. Frontiers in Plant Science 6, 386 (2015)
126.
Journal Article
Nikoloski, Z.; Perez-Storey, R.; Sweetlove, L. J.: Inference and Prediction of Metabolic Network Fluxes. Plant Physiology 169 (3), pp. 1443 - 1455 (2015)
127.
Journal Article
Omranian, N.; Kleessen, S.; Tohge, T.; Klie, S.; Basler, G.; Mueller-Roeber, B.; Fernie, A. R.; Nikoloski, Z.: Differential metabolic and coexpression networks of plant metabolism. Trends in Plant Science 20 (5), pp. 266 - 268 (2015)
128.
Journal Article
Omranian, N.; Mueller-Roeber, B.; Nikoloski, Z.: Segmentation of biological multivariate time-series data. Scientific Reports 5, p. 8937 - 8937 (2015)
129.
Journal Article
Toubiana, D.; Batushansky, A.; Tzfadia, O.; Scossa, F.; Khan, A.; Barak, S.; Zamir, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81 (1), pp. 121 - 133 (2015)
130.
Journal Article
Weiwei, W.; Li, K.; Alseekh, S.; Omranian, N.; Zhao, L.; Zhou, Y.; Xiao, Y.; Jin, M.; Yang, N.; Liu, H. et al.; Florian, A.; Li, W.; Pan, Q.; Nikoloski, Z.; Yan, J.; Fernie, A. R.: Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27 (7), pp. 1839 - 1856 (2015)
131.
Journal Article
Arnold, A.; Nikoloski, Z.: Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. Plant Physiology 165 (3), pp. 1380 - 1391 (2014)
132.
Journal Article
Sauvage, C.; Segura, V.; Bauchet, G.; Stevens, R.; Do, P. T.; Nikoloski, Z.; Fernie, A. R.; Causse, M.: Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiology 165 (3), pp. 1120 - 1132 (2014)
133.
Journal Article
Bellucci, E.; Bitocchi, E.; Ferrarini, A.; Benazzo, A.; Biagetti, E.; Klie, S.; Minio, A.; Rau, D.; Rodriguez, M.; Panziera, A. et al.; Venturini, L.; Attene, G.; Albertini, E.; Jackson, S. A.; Nanni, L.; Fernie, A. R.; Nikoloski, Z.; Bertorelle, G.; Delledonne, M.; Papa, R.: Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26 (5), pp. 1901 - 1912 (2014)
134.
Journal Article
Kleessen, S.; Laitinen, R.; Fusari, C. M.; Antonio, C.; Sulpice, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, 3537 (2014)
135.
Journal Article
Arnold, A.; Nikoloski, Z.: In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, pp. 171 - 194 (2014)
136.
Journal Article
Feher, K.; Lisec, J.; Römisch-Margl, L.; Selbig, J.; Gierl, A.; Piepho, H.-P.; Nikoloski, Z.; Willmitzer, L.: Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9 (1), e85435 (2014)
137.
Journal Article
Breuer, D.; Ivakov, A.; Sampathkumar, A.; Hollandt, F.; Persson, S.; Nikoloski, Z.: Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11 (97), 20140362 (2014)
138.
Journal Article
Breuer, D.; Nikoloski, Z.: img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30 (22), pp. 3291 - 2 (2014)
139.
Journal Article
Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), pp. 893 - 911 (2014)
140.
Journal Article
Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)
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