Publications of Z. Nikoloski
All genres
Journal Article (190)
161.
Journal Article
3, p. 249 (2012)
Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 162.
Journal Article
8 (9), pp. 2233 - 2241 (2012)
Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 163.
Journal Article
3, p. 115 (2012)
The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 164.
Journal Article
7 (9), pp. 1095 - 1102 (2012)
Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana. Plant Signaling & Behavior 165.
Journal Article
8 (4), pp. 1121 - 1127 (2012)
PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Molecular BioSystems 166.
Journal Article
159 (4), pp. 1713 - 1729 (2012)
Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior. Plant Physiology 167.
Journal Article
314, pp. 192 - 203 (2012)
Restricted cooperative games on metabolic networks reveal functionally important reactions. Journal of Theoretical Biology 168.
Journal Article
6 (1), p. 148 (2012)
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 169.
Journal Article
8 (3), p. e1002612 (2012)
Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations. PLoS Genetics 170.
Journal Article
106 (1), pp. 1 - 8 (2011)
Robustness of metabolic networks: A review of existing definitions. Biosystems 171.
Journal Article
16 (12), pp. 676 - 683 (2011)
A quantitative comparison of CalvinBenson cycle models. Trends in Plant Science 172.
Journal Article
27 (10), pp. 1397 - 1403 (2011)
Mass-balanced randomization of metabolic networks. Bioinformatics 173.
Journal Article
9 (71), pp. 1168 - 1176 (2011)
Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 174.
Journal Article
27 (19), pp. 2761 - 2762 (2011)
JMassBalance: mass-balanced randomization and analysis of metabolic networks. Bioinformatics 175.
Journal Article
103 (2), pp. 212 - 223 (2011)
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosystems 176.
Journal Article
12, p. 292 (2011)
Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 177.
Journal Article
107 (5), p. 054101 (2011)
Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters 178.
Journal Article
68 (2), pp. 326 - 336 (2011)
Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns. The Plant Journal 179.
Journal Article
23 (3), pp. 895 - 910 (2011)
PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 180.
Journal Article
104 (1), pp. 1 - 8 (2011)
Complexity of automated gene annotation. Biosystems