Publications of S. Alseekh

Omidbakhshfard, M. A.; Sokolowska, E.; Di Vittori, V.; de Souza, L. P.; Kuhalskaya, A.; Brotman, Y.; Alseekh, S.; Fernie, A. R.; Skirycz, A.: Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2 (4), 100235 (2021)

Ren, Y.; Li, M.; Guo, S.; Sun, H.; Zhao, J.; Zhang, J.; Liu, G.; He, H.; Tian, S.; Yu, Y. et al.; Gong, G.; Zhang, H.; Zhang, X.; Alseekh, S.; Fernie, A. R.; Scheller, H. V.; Xu, Y.: Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell 33 (5), pp. 1554 - 1573 (2021)

Salem, M. A.; Zayed, A.; Alseekh, S.; Fernie, A. R.; Giavalisco, P.: The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe. Phytochemistry 190, 112843 (2021)

Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)

Staykov, N. S.; Angelov, M.; Petrov, V.; Minkov, P.; Kanojia, A.; Guinan, K. J.; Alseekh, S.; Fernie, A. R.; Sujeeth, N.; Gechev, T. S.: An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11 (1), 24 (2021)

Di Vittori, V.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Bellucci, E.; Nanni, L.; Gioia, T.; Marzario, S.; Logozzo, G.; Rossato, M. et al.; De Quattro, C.; Murgia, M. L.; Ferreira, J. J.; Campa, A.; Xu, C.; Fiorani, F.; Sampathkumar, A.; Fröhlich, A.; Attene, G.; Delledonne, M.; Usadel, B.; Fernie, A. R.; Rau, D.; Papa, R.: Pod indehiscence in common bean is associated to the fine regulation of PvMYB26. Journal of Experimental Botany 72 (5), pp. 1617 - 1633 (2020)

Sewelam, N.; Brilhaus, D.; Bräutigam, A.; Alseekh, S.; Fernie, A. R.; Maurino, V. G.: Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes. Journal of Experimental Botany 71 (16), pp. 5098 - 5112 (2020)

Aksenov, A.A.; Laponogov, I.; Zhang, Z.; Doran, S.L.F.; Belluomo, I.; Veselkov, D.; Bittremieux, W.; Nothias, L.F.; Nothias-Esposito, M.; Maloney, K.N. et al.; Misra, B.B.; Melnik, A.V.; Smirnov, A.; Du, X.; Jones, K.L.; Dorrestein, K.; Panitchpakdi, M.; Ernst, M.; van der Hooft, J.J.J.; Gonzalez, M.; Carazzone, C.; Amézquita, A.; Callewaert, C.; Morton, J.T.; Quinn, R.A.; Bouslimani, A.; Orio, A.A.; Petras, D.; Smania, A.M.; Couvillion, S.P.; Burnet, M.C.; Nicora, C.D.; Zink, E.; Metz, T.O.; Artaev, V.; Humston-Fulmer, E.; Gregor, R.; Meijler, M.M.; Mizrahi, I.; Eyal, S.; Anderson, B.; Dutton, R.; Lugan, R.; Boulch, P.L.; Guitton, Y.; Prevost, S.; Poirier, A.; Dervilly, G.; Le Bizec, B.; Fait, A.; Persi, N.S.; Song, C.; Gashu, K.; Coras, R.; Guma, M.; Manasson, J.; Scher, J.U.; Barupal, D.K.; Alseekh, S.; Fernie, A. R.; Mirnezami, R.; Vasiliou, V.; Schmid, R.; Borisov, R.S.; Kulikova, L.N.; Knight, R.; Wang, M.; Hanna, G.B.; Dorrestein, P.C.; Veselkov, K.: Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. Nature Biotechnology 39, pp. 169 - 173 (2020)

Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)

Alseekh, S.; Ofner, I.; Liu, Z.; Osorio, S.; Vallarino, J. G.; Last, R. L.; Zamir, D.; Tohge, T.; Fernie, A. R.: Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato. The Plant Journal 103 (6), pp. 2007 - 2024 (2020)

Alseekh, S.; Scossa, F.; Fernie, A. R.: Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25 (11), pp. 1062 - 1064 (2020)

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65, pp. 185 - 196 (2020)

Correa, S. M.; Alseekh, S.; Atehortúa, L.; Brotman, Y.; Ríos-Estepa, R.; Fernie, A. R.; Nikoloski, Z.: Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)

de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)

Fernie, A. R.; Alseekh, S.: Tomato multiomics at aPEELing resolution. Nature Plants 6 (12), pp. 1394 - 1395 (2020)

Fernie, A. R.; Alseekh, S.: Publisher Correction: Tomato multiomics at aPEELing resolution (Nature Plants, (2020), 10.1038/s41477-020-00807-8). Nature Plants 6, 1506 (2020)

Gutsch, A.; Hendrix, S.; Guerriero, G.; Renaut, J.; Lutts, S.; Alseekh, S.; Fernie, A. R.; Hausman, J.-F.; Vangronsveld, J.; Cuypers, A. et al.; Sergeant, K.: Long-Term Cd Exposure Alters the Metabolite Profile in Stem Tissue of Medicago sativa. Cells 9 (12), 2707 (2020)

Jiao, C.; Sørensen, I.; Sun, X.; Sun, H.; Behar, H.; Alseekh, S.; Philippe, G.; Palacio Lopez, K.; Sun, L.; Reed, R. et al.; Jeon, S.; Kiyonami, R.; Zhang, S.; Fernie, A. R.; Brumer, H.; Domozych, D. S.; Fei, Z.; Rose, J. K.C.: The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants. Cell 181 (5), pp. 1097 - 1111.e12 (2020)

Kuhalskaya, A.; Wijesingha Ahchige, M.; de Souza, L. P.; Vallarino, J. G.; Brotman, Y.; Alseekh, S.: Network analysis provides insight into tomato lipid metabolism. Metabolites 10 (4), 152 (2020)

Li, Y.; Chen, Y.; Zhou, L.; You, S.; Deng, H.; Chen, Y.; Alseekh, S.; Yuan, Y.; Fu, R.; Zhang, Z. et al.; Su, D.; Fernie, A. R.; Bouzayen, M.; Ma, T.; Liu, M.; Zhang, Y.: MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle. Molecular Plant 13 (8), pp. 1203 - 1218 (2020)