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Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)

Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Fernie, A. R.: Enhancing crop yield in Solanaceous species through the genetic manipulation of energy metabolism. In: BioScience 2005 Conference, pp. 1430 - 1434. BioScience 2005 Conference, Glasgow, SCOTLAND. (2005)

Fernie, A. R.; Riesmeire, J. W.; Martiny, A.; Ramalingam, S.; Willmitzer, L.; Trethewey, R. N.: Consequences of the expression of a bacterial glucokinase in potato tubers, both in combination with and independently of a yeast-derived invertase. In: Australian Journal of Plant Physiology, pp. 827 - 833. Australian Journal of Plant Physiology. (2000)

Hincha, D. K.; Schulz, E.; Thalhammer, A.; Tohge, T.; Sulpice, R.; Fernie, A. R.; Zuther, E.: The Role of Secondary Metabolites and COR Proteins in Plant Freezing Tolerance. In In Vitro Cellular & Developmental Biology-Animal, 50, p. S13 - S13. Tissue Culture Association, Columbia, MD (2014)

van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R.: The role and regulation of the tricarboxylic acid cycle in Solanum lycopersicum roots. In South African Journal of Botany, 75 (2), p. 424 - 424. (2009)

Carrari, F.; Fernie, A. R.: Characterizing the metabolic regulation that underlies tomato fruit development. In Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology, 141 (3), p. S297 - S297. (2005)

Ishizaki, K.; Larson, T. A.; Schauer, N.; Fernie, A. R.; Graham, I. A.; Leaver, C. J.: The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. In Plant Cell, 17 (9), pp. 2587 - 2600. (2005)

Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: mRNA Analysis of Plant Metabolic Regulation: Comparison of Transcript and Metabolic Complements of Developing Plant Tissues. In Acta Physiologiae Plantarum, 26 (3), p. 55 - 55. (2004)

Fernie, A. R.: Interview with Alisdair R. Fernie. (2014)

Fernie, A. R.: Systems biology: A new CAM era, Nature Plants, (2016)

Hampp, C.; Richter, A.; Osorio, S.; Zellnig, G.; Sinha, A. K.; Jammer, A.; Fernie, A. R.; Grimm, B.; Roitsch, T.: Establishment of a Photoautotrophic Cell Suspension Culture of Arabidopsis thaliana for Photosynthetic, Metabolic, and Signaling Studies, Molecular Plant 5, pp. 524 - 527 (2012)

Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, pp. 2477 - 2482 (2011)

Fernie, A. R.; Hashida, S.-N.; Yoshimura, K.; Gakière, B.; Mou, Z.; Pétriacq, P.: Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science 11, 146 (2020)

Fernie, A. R.; Wen, W.: Editorial overview: Evolution of metabolic diversity. Current Opinion in Plant Biology 55, pp. A1 - A4 (2020)

Fernie, A. R.: Seeing is believing: the three-way division of labor in the photosynthetic thylakoid membrane. The Plant Journal 97 (3), pp. 410 - 411 (2019)

Fernie, A. R.: Making sense of the complex role of the mitochondria in mediating the plant touch response. The Plant Journal 97 (4), pp. 621 - 622 (2019)

Fernie, A. R.; Sweetlove, L.: The Plant Journal actively supports Open Science and data transparency. The Plant Journal 97 (3), p. 409 - 409 (2019)

Sweetlove, L. J.; Aharoni, A.; Fernie, A. R.: Introducing TPJ Fellowships for early stage Principal Investigators. The Plant Journal 100 (3), p. 435 - 435 (2019)

Kopka, J.; Fernie, A. R.: Editorial overview: Plant synthetic and systems biology. Current Opinion in Biotechnology 49, pp. viii - xi (2018)

Fernie, A. R.; Pichersky, E.: Focus Issue on Metabolism: Metabolites, Metabolites Everywhere. Plant Physiology 169 (3), pp. 1421 - 1423 (2015)