Publications of A. R. Fernie

Malinova, I.; Mahlow, S.; Alseekh, S.; Orawetz, T.; Fernie, A. R.; Baumann, O.; Steup, M.; Fettke, J.: Double Knockout Mutants of Arabidopsis Grown under Normal Conditions Reveal that the Plastidial Phosphorylase Isozyme Participates in Transitory Starch Metabolism. Plant Physiology 164 (2), pp. 907 - 921 (2014)

Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)

Arrivault, S.; Guenther, M.; Florian, A.; Encke, B.; Feil, R.; Vosloh, D.; Lunn, J. E.; Sulpice, R.; Fernie, A. R.; Stitt, M. et al.; Schulze, W. X.: Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular and Cellular Proteomics 13 (9), pp. 2246 - 2259 (2014)

Avin-Wittenberg, T.; Fernie, A. R.: At Long Last: Evidence for Pexophagy in Plants. Molecular Plant 7 (8), pp. 1257 - 1260 (2014)

Bastias, A.; Yanez, M.; Osorio, S.; Arbona, V.; Gomez-Cadenas, A.; Fernie, A. R.; Casaretto, J. A.: The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits. Journal of Experimental Botany 65 (9), pp. 2351 - 63 (2014)

Bermúdez, L.; de Godoy, F.; Balder, P.; Demarco, D.; Osorio, S.; Quadrana, L.; Almeida, J.; Asis, R.; Gibon, Y.; Fernie, A. R. et al.; Rossi, M.; Carrari, F.: Silencing of the tomato Sugar Partitioning Affecting protein (SPA), modifies sink strength through a shift in leaf sugar metabolism. The Plant Journal 77 (5), pp. 676 - 687 (2014)

Cavalcanti, J. H. F.; Esteves-Ferreira, A. A.; Quinhones, C. G. S.; Pereira-Lima, I. A.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Evolution and functional implications of the tricarboxylic acid cycle as revealed by phylogenetic analysis. Genome biology and evolution 6 (10), pp. 2830 - 48 (2014)

Fernandez-Calvino, L.; Osorio, S.; Hernandez, M. L.; Hamada, I. B.; Del Toro, F. J.; Donaire, L.; Yu, A.; Bustos, R.; Fernie, A. R.; Martinez-Rivas, J. M. et al.; Llave, C.: Virus-Induced Alterations in Primary Metabolism Modulate Susceptibility to Tobacco rattle virus in Arabidopsis. Plant Physiology 166 (4), pp. 1821 - 38 (2014)

Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), pp. 893 - 911 (2014)

Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)

Gago, J.; Douthe, C.; Florez-Sarasa, I. D.; Escalona, J. M.; Galmes, J.; Fernie, A. R.; Flexas, J.; Medrano, H.: Opportunities for improving leaf water use efficiency under climate change conditions. Plant Science 226, pp. 108 - 119 (2014)

Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)

Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, 5067 (2014)

Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), pp. 55 - 68 (2014)

Koenig, A. G.; Hartl, M.; Pham, P. A.; Laxa, M.; Boersema, P.; Orwat, A.; Kalitventseva, I.; Ploechinger, M.; Braun, H. P.; Leister, D. et al.; Mann , M.; Wachter, A.; Fernie, A. R.; Finkemeier, I.: The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiology 164, pp. 1406 - 1412 (2014)

Lohse, M.; Nagel, A.; Herter, T.; May, P.; Schroda, M.; Zrenner, R.; Tohge, T.; Fernie, A. R.; Stitt, M.; Usadel, B.: Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37 (5), pp. 1250 - 1258 (2014)

Malinova, I.; Kunz, H.-H.; Alseekh, S.; Herbst, K.; Fernie, A. R.; Gierth, M.; Fettke, J.: Reduction of the Cytosolic Phosphoglucomutase in Arabidopsis Reveals Impact on Plant Growth, Seed and Root Development, and Carbohydrate Partitioning. PLoS One 9 (11), e112468 (2014)

Nunes-Nesi, A.; Florian, A.; Howden, A.; Jahnke, K.; Timm, S.; Bauwe, H.; Sweetlove, L.; Fernie, A. R.: Is There a Metabolic Requirement for Photorespiratory Enzyme Activities in Heterotrophic Tissues? Molecular Plant 7 (1), pp. 248 - 251 (2014)

Quadrana, L.; Almeida, J.; Asis, R.; Duffy, T.; Dominguez, P. G.; Bermudez, L.; Conti, G.; da Silva, J. V. C.; Peralta, I. E.; Colot, V. et al.; Asurmendi, S.; Fernie, A. R.; Rossi, M.; Carrari, F.: Natural occurring epialleles determine vitamin E accumulation in tomato fruits. Nature Communications 5, 4027 (2014)

Ruprecht, C.; Tohge, T.; Fernie, A. R.; Mortimer, C. L.; Kozlo, A.; Fraser, P. D.; Funke, N.; Cesarino, I.; Vanholme, R.; Boerjan, W. et al.; Morreel, K.; Burgert, I.; Gierlinger, N.; Bulone, V.; Schneider, V.; Stockero, A.; Navarro, J. P.; Pudel, F.; Tambuyser, B.; Hygate, J.; Bumstead, J.; Notley, L.; Persson, S.: Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry. Journal of visualized experiments: JoVE (87), e51393 (2014)