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Journal Article (79)

Journal Article
Durek, P.; Schudoma, C.; Weckwerth, W.; Selbig, J.; Walther, D.: Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, p. 117 (2009)
Journal Article
Kersten, B.; Agrawal, G. K.; Durek, P.; Neigenfind, J.; Schulze, W. X.; Walther, D.; Rakwal, R.: Plant phosphoproteomics: An update. Proteomics 9 (4), pp. 964 - 988 (2009)
Journal Article
Kierszniowska, S.; Walther, D.; Schulze, W. X.: Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 9 (7), pp. 1916 - 1924 (2009)
Journal Article
May, P.; Christian, J. O.; Kempa, S.; Walther, D.: ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. BMC Genomics 10, p. 209 (2009)
Journal Article
Pant, B. D.; Musialak-Lange, M.; Nuc, P.; May, P.; Buhtz, A.; Kehr, J.; Walther, D.; Scheible, W.-R.: Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 150 (3), pp. 1541 - 1555 (2009)
Journal Article
Durek, P.; Walther, D.: The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, p. 100 (2008)
Journal Article
Fait, A.; Fromm, H.; Walther, D.; Galili, G.; Fernie, A. R.: Highway or byway: the metabolic role of the GABA shunt in plants. Trends in Plant Science 13 (1), pp. 14 - 19 (2008)
Journal Article
Heazlewood, J. L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W. X.: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), pp. D1015 - D1021 (2008)
Journal Article
Koehl, K. I.; Basler, G.; Lüdemann, A.; Selbig, J.; Walther, D.: A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, p. 11 (2008)
Journal Article
Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)
Journal Article
May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)
Journal Article
Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, p. 216 (2007)
Journal Article
Stacklies, W.; Redestig, H.; Scholz, M.; Walther, D.; Selbig, J.: pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23 (9), pp. 1164 - 1167 (2007)
Journal Article
Walther, D.; Brunnemann, R.; Selbig, J.: The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana. PLoS Genetics 3 (2), p. e11 (2007)
Journal Article
Deng, M. C.; Eisen, H. J.; Mehra, M. R.; Billingham, M.; Marboe, C. C.; Berry, G.; Kobashigawa, J.; Johnson, F. L.; Starling, R. C.; Murali, S. et al.; Pauly, D. F.; Baron, H.; Wohlgemuth, J. G.; Woodward, R. N.; Klingler, T. M.; Walther, D.; Lal, P. G.; Rosenberg, S.; Hunt, S.: Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling. American Journal of Transplantation 6 (1), pp. 150 - 160 (2006)
Journal Article
Mehra, M. R.; Uber, P. A.; Walther, D.; Vesely, M.; Wohlgemuth, J. G.; Prentice, J.; Tayama, D.; Billingham, M.: Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation more than a hemodynamic marker. Circulation 114 (1 Suppl), pp. I21 - I26 (2006)
Journal Article
Jin, P.; Walther, D.; Zhang, J.; Rowe-Teeter, C.; Fu, G. K.: Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABA(A)) receptor gamma 2 subunit, mediates subunit interaction and cell surface localization. Journal of Biological Chemistry 279 (14), pp. 14179 - 14183 (2004)
Journal Article
Gabdoulline, R. R.; Wade, R. C.; Walther, D.: MolSurfer: a macromolecular interface navigator. Nucleic Acids Research 31 (13), pp. 3349 - 3351 (2003)
Journal Article
Meyer, A. S.; Gillespie, J. R.; Walther, D.; Millet, I. S.; Doniach, S.; Frydman, J.: Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell 113 (3), pp. 369 - 381 (2003)

Book Chapter (8)

Book Chapter
Walther, D.: The combinatorics of cis-regulatory elements: from cooperatively acting motifs to gene regulatory networks. In: The analysis of cis-elements: Current developments, knowledge and applications to gene networking, pp. 176 - 188 (Eds. Berendzen, K.; Wanke, D.). Bentham Books, AG Bussum (2013)
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