Archiv der bisher stattgefundenen Seminare

Ort: Central Building

Post-transcriptional regulation of plant gene expression in stress situation

May 2025

Mechanical control of seed Morphogenesis

May 2025

Electron transfer at Photosystem I and the Cytochrome b6f Complex: Mechanistic Insights and STT7 Kinase Feedback Regulation

May 2025

Designing Photosynthesis in Rice

April 2025

Cell edges - from polarity to growth control

April 2025

Microtubule functions in plants - Evolutionary aspects and biological implications

April 2025

Greetings from the vascular: Untapping the brassinosteroid signaling pathway mediated by BRL3 receptors

March 2025

The Resistance Awakens: Natural Diversity Informs Engineering of Plant Immune Receptors

March 2025

Actin Tug-of-War: A Novel Mechanism Regulating Seed Size by Controlling Endosperm Nuclear Positioning and Movement

March 2025

Decoding cellular quality control mechanisms through evolutionary cell biology

March 2025

Phasing viruses in RNA regulation

February 2025

Inositol pyrophosphates - Regulators of plant root endosymbiosis?

February 2025

From Seed to Seed: Understanding Microbial Inheritance in Plants

February 2025

Nitrogen nutrition as versatile determinant of root plasticity

December 2024

Evolutionary Roots and Mechanistic Principles of Auxin Response

December 2024

Unraveling the plant epiproteome

November 2024

A Touchy Topic: The mechanical nature of plant pathogenesis

November 2024

Investigating the interaction of viroids with host factors

November 2024

How to silence a gene? Insights from a cold-induced epigenetic switch

November 2024

Transcriptional control in plants

November 2024

Convergent evolution of flowers following independent mating system shifts

October 2024

Spectral Eyes on Nature: Tracking Real-Time Physiological Dynamics in Plants

October 2024

Intrinsically disordered proteins for new-to-nature carbon fixation

Oktober 2024

Cross-kingdom virus infection: mycoviruses pave the way for spread into multiple fungal hosts

September 2024

The dual role of parental conflict in speciation

September 2024

Vitamin metabolism in plants: from B-vitamin biology to crop improvement

September 2024

From molecular live imaging to the energetics of intracellular superstructures in Chlamydomonas

August 2024

Emission and Perception: Two Parts of Plant Volatile Communication

July 2024

Unraveling land plant evolution through comparative transcriptomics of bryophytes, ferns and flowering plants

July 2024

The reductive and recurrent evolution of the chloroplast genome

June 2024

Epigenetic management of self and non-self in plants

June 2024

Single cell targeted boosting of plant regeneration and genome editing in maize

June 2024

Camalexin in the control of plant microbe interactions in the rhizosphere

May 2024

Plant Apocarotenoids: Metabolism and Applications

Mai 2024

Leveraging plant genetic diversity to investigate above- and belowground plant-microbiota interactions

April 2024

A Pair of microRNAs Controls the Unique Pigmentation Shift in Developing Eggplant Fruit Skin

April 2024

ROS-mediated receptor kinase signalling in plants

March 2024

How do individual subunits of conserved molecular complexes acquire novel functions?

March 2024

Protein homeostasis networks - challenges and opportunities for stressed plants

February 2024

The cell snatchers - Understanding plant manipulation by geminiviruses

February 2024

Mobilization of endogenous transposable elements in plants for basic and applied research

December 2023

Connection matters: Pi Sensing and ER Quality Control

November 2023

Phosphate status metabolically cues root apical stem cell maintenance via the RGF1-PLT2 regulatory network

November 2023

Nitrate signaling for plant growth and development: the ins and outs of NLP-transcription factors

November 2023

Nodules and clocks: communication underground

November 2023

Uridylation: a multitasking modification in RNA degradation

October 2023

Towards understanding the role of the extreme ribosome heterogeneity of plants

October 2023

Differences in host resistance and susceptibility to infection modulate the rate of plant virus evolution

October 2023

Controlling transcription from within transcribed regions in flowering plants

September 2023

Feedback control of mitosis in the context of the kinetochore

September 2023

A survey on structural dynamics of energy-converting thylakoid membranes in vascular plants

July 2023

Metabolic arms race between a plant and a fungal pathogen

July 2023

Remodeling the plant cell wall from the inside out

May 2023

Epigenetic control of life cycle transitions in plants and beyond

May 2023

Exploring the genetic diversity of Brazilian Cleomaceae species to understand the evolution of photosynthesis

April 2023

A Bioeconomy: What is it and why should I care?

March 2023

A Bioeconomy: What is it and why should I care?

Mastering the maze – how plant sperm reach their mating partners

March 2023

Publishing in Current Biology and Cell Press

März 2023

How do plants optimize photosynthetic light-harvesting under various light conditions?

March 2023

How do plants optimize photosynthetic light-harvesting under various light conditions?

März 2023

Distributed information processing in plant organs

Februar 2023

Apoplastic modifications in plant reproductive development: The (w)hole story

November 2022

The evolution of plant reproduction: what have we missed so far?

November 2022

LncRNAs, quantitative regulators of level and dynamic of gene expression

Functional genetics of barley stamen maturation

Epigenetic control of transposon activity and dosage in pollen and hybrid seeds

The Hypocotyl Endodermis: a model tissue for seedling plasticity

The journey of two Agronautes along the plant germline

Exploring the cellular basis of organ curvature using 3D digital ovules

Overlapping pathways of sugars and hormones in control of plant architecture

  • Datum: 22.07.2022
  • Uhrzeit: 14:00 - 15:30
  • Vortragende(r): Franziska Fichtner
  • ARC Centre for Plant Success in Nature and Agriculture & School of Biological Sciences, The University of Queensland, St Lucia, Australia
  • Ort: Central Building
  • Raum: Lecture Hall
  • Gastgeber: John Lunn

CANCELED --- Christopher J. Marx - A purely Lamarckian "evolution" permits survival of a bacterium to a lethal stressor

Oscar A Ruiz - Lotus spp. as a good tool for productive and environmental objectives in Argentinian agriculture

Antony Dodd - Circadian regulation of plant cell signalling

January 2020

Raphael Trösch - The regulation of chloroplast protein homeostasis: from chloroplast protein import to protein synthesis

Michael Wrzaczek - Cysteine-rich receptor-like kinase 2 coordinates abiotic and biotic stress responses

December 2019

Talia Karasov - Mechanisms of microbial interactions with Arabidopsis thaliana

Philip Wigge - How do plants sense temperature?

November 2019

Nadine Töpfer - Environment-Coupled Models of Leaf Metabolism Capture Mechanisms of Crassulacean Acid Metabolism

November 2019

Anja Schneider - Manganese Transporter in Chloroplasts

Christopher Surridge - Publishing Without Tears

Aalt-Jan van Dijk - Who goes with whom, and why - computational approaches towards understanding of biomolecular interactions

Anne Krapp - Early nitrate signalling by NLP transcription factors in Arabidopsis

Markus Ralser - From its origins to the modern metabolic network

September 2019

Patricia León - Understanding the regulation and possible manipulation of the limiting enzymes of the MEP pathway required for the synthesis of central molecules in plants

September 2019

Jennifer C Ewald - Cross-talk between metabolism and the cell division cycle

August 2019

Robert Sablowski

May 2019

Iain Johnston

Alex Costa - In vivo calcium dynamics in plant cells: a holistic view

March 2019

Arp Schnittger - The cell biology of genetics

Recombination between homologous chromosomes is a fundamental source of genetic variation andthe basis of nearly all genetics. With this, recombination is also key to evolution and breeding. Theexchange of chromosome segments is accomplished in meiosis and involves tight control ofchromosome behavior, i.e. pairing and synapsis of homologous chromosomes, the formation of DNAdouble strand break and subsequent repair through cross-overs followed by an intricate mechanism toequally distribute the chromosomes to daughter cells. Our research goal is to understand howrecombination is controlled and how the distinct molecular events of the recombination process areorchestrated. We have focused on the cell cycle control machinery and have in particular identifiedCYCLIN-DEPENDENT KINASE A;1 (CDKA;1), the Arabidopsis homolog of the animal and yeastkinases Cdk1 and Cdk2, as a major driving force through meiosis. A substrate search revealed thatmany of the central meiotic regulators are potential CDK phospho-targets. To further elaborate on thecontrol processes of meiosis, we have developed a live cell imaging system that allows us to followchromosome behavior in great temporal and spatial resolution. This imaging system also provides uswith a new possibility to quantify the dynamic processes of meiosis. Here, I will present the latest datafrom our team how differential phosphorylation influences recombination and promotes progressionthrough meiosis. [mehr]

Hiroshi Maeda - Exploiting Evolutionary Diversification of Primary Metabolic Enzymes

November 2018

Anna Amtmann - Unravelling cell-type specific regulatory networks in plant roots

October 2018

Rodrigo Gutierrez

Angela Hay - Explosive seed dispersal

Sean Cutler - Tuning plant water use using abscisic acid receptors

May 2018

Caroline Gutjahr - Arbuscular mycorrhiza development and function

Elisabeth Haswell - Stretching the Imagination: Mechanosensitive Channels in Plants

December 2017

Lars Scharff - Regulation and fine-tuning of protein synthesis in chloroplasts

November 2017

Tom Sharkey

October 2017

Arndt Telschow

Michal Shapira

Simona Nardozza - The effect of long-term regulation of carbohydrate supply on carbohydrate and anthocyanin metabolism in a red Actindia chinensis var. chinensis genotype

Abstract: Kiwifruit is one of the most recent successful fruit crops on the market. Alongside the well-known green-fleshed Actinidia chinensis var. deliciosa ‘Hayward’, other species with different flavour, shape and colour (yellow and red) have been used in breeding programmes to develop new cultivars. Novel coloured kiwifruit are attractive to consumers, but achieving uniform fruit pigmentation, particularly in red-fleshed Actinidia chinensis var. chinensis genotypes, is challenging. Colour inconsistency between fruit can affect consumer perception, lowering returns to growers. To investigate the cause of colour inconsistency we focused on a solid red-fleshed genotype characterised by variable outer pericarp red pigmentation, we hypothesised that the carbohydrate supply could be responsible for the variation of the red flesh colour. Early in fruit development (28 days after anthesis, DAA) we adjusted the leaf-to-fruit ratio of the shoots to two different carbohydrate supplies (standard and low). Carbohydrate import or redistribution outside of the shoot was controlled by applying a girdle at the base of the shoot, and this girdle was maintained open until harvest to guarantee long-term control of carbohydrate supply. From 84 DAA we observed a reduction in fruit size by about 30 percent, dry matter was reduced by more than 20 percent and colour development by more than 80 percent when fruit had low carbohydrate supply. Both anthocyanin and carbohydrate metabolites were affected. The concentration of major non-structural carbohydrates (starch, glucose, sucrose, and fructose) were also reduced by more than 50 percent in fruit with low carbohydrate supply from 84 DAA. A minor sugar, galactose, was also dramatically reduced by low carbohydrate supply. By 112 DAA, total anthocyanin concentration in the outer pericarp of fruit with low carbohydrate supply was reduced by more than 80 percent. Despite these significant changes in fruit development and metabolites, transcription for candidate genes considered critical steps in the anthocyanin biosynthetic pathway (i.e. GT1, MYB10 and bHLH5) were unchanged between fruit with the two carbohydrate supplies. Interestingly, in low carbohydrate supply fruit, a vacuolar invertase gene (INV3) was upregulated at 112 DAA and a beta-amylase gene (BAM9) was upregulated at 84 and 112 DAA. The upregulation of these two genes could be correlated to the low carbohydrate supply available to the fruit and the need to deplete the starch stored in the fruit to support further development. This work suggested a link between carbohydrate and anthocyanin metabolism, and we now have two further hypothesis to test: i) Galactose is the glycosyl moiety of the main kiwifruit anthocyanin measured in these fruit, and given that galactose content was affected by low carbohydrate supply, repression of colour development could be due to substrate limitation; and/or ii) Carbohydrate depletion could have an effect on an unknown repressor of the anthocyanin pathway. We are currently performing a transcriptomic (RNAseq) experiment to test these hypotheses and results should be available soon. [mehr]

Bernard Carrol - Systemic RNA silencing in plants

July 2017

Cornelia Spetea Wiklund - Thylakoid K+ and Cl- Channels and Transporters Regulate Photosynthesis in a Rapidly Changing Environment

June 2017
Abstract In variable light environments, plants rapidly adjust photosynthesis for an optimal balance between photochemistry and photoprotection. There is increasing evidence that ion fluxes across thylakoid membranes play an important role in regulation of photosynthesis. Recent work from our laboratory have unraveled the roles of the K+/H+ antiporter KEA3, the putative Cl channel CLCe and the voltage-dependent Clchannel VCCN1 in thylakoid ion homeostasis and photosynthetic regulation in Arabidopsis thaliana. However, the current knowledge about these transport proteins comes from the characterization of single loss-of-function mutants of the corresponding genes in Arabidopsis, which do not provide information about possible functional relationships between K+ and Cl fluxes in the thylakoid membrane. In my seminar, I will provide an overview of the current knowledge about genes involved in ion fluxes and regulation of photosynthesis and present data from characterization of higher-order mutants of KEA3, CLCe and VCCN1. Our findings contribute to understanding the thylakoid network of ion fluxes and how they help plants to adjust photosynthesis in variable light environments. [mehr]

Michel Havaux - Singlet oxygen signaling mediated by the apocarotenoid b-cyclocitral in Arabidopsis

Abstract Reactive oxygen species (ROS) are inevitable by-products of photosynthesis. In particular, singlet oxygen (1O2) is intimately associated with photosynthesis since it is produced from the chlorophyll molecules acting as photosensitizers. The ROS produced in the chloroplasts have a signaling function leading to changes in the expression of nuclear genes to adjust the cellular metabolism to the levels of absorbed light energy. The changes in gene expression associated with 1O2 signaling can lead either to cell death or to acclimation to photooxidative stress, depending on the 1O2 production levels. Because of its high reactivity and short lifetime, 1O2 uses mediators for its signaling. Produced in the chloroplast, the b-carotene derivative b-cyclocitral has been identified as an upstream signal molecule in the 1O2 signaling pathway. This talk will summarize our results on the function and mode of action of this apocarotenoid in the acclimation of plants to environmental stresses. [mehr]

Staffan Persson - Plants and plumbing; A design guide to efficient water transportation

Abstract: The plant xylem is one of the most important evolutionary innovations for terrestrial life, as it allowed plants to adapt and growth to significant stature. The xylem cells are encased by thickened cell walls that reinforce them and that are typically organized in spiraling or reticulate patterns. These wall types are largely assembled from the polysaccharide cellulose, which is synthesized at the plasma membrane by large cellulose synthase (CesA) complexes. The CesAs move along linear tracks at the plasma membrane, which is likely due to the catalytic activity of the proteins. The direction of the CesA movement is thought to be steered by cortical microtubules via the protein Cellulose Synthase Interacting (CSI)1; however, this is not clarified for secondary wall synthesis. In addition, it is unclear how the microtubules are re-arranged to support patterns of the cell walls and how this transition affect cellulose synthesis. In this talk I will outline how microtubules re-arrange themselves to support the transition between primary and secondary wall cellulose synthesis. These results will provide a framework to understand how patterned secondary walls emerge. [mehr]

Paulo Ferreira - A ROLE FOR THE SUBUNIT 7 OF THE ANAPHASE PROMOTING COMPLEX (APC7) IN THE PLANT IMMUNE SYSTEM RESPONSES

In contrast to animals, plant development is mostly postembryonic; during embryogenesis the main developmental event is the establishment of the root–shoot axis. Organ initiation and growth take place after germination, driven by cell division and differentiation at the meristems. Progression through the cell division cycle requires the temporal and spatial control by regulatory proteins in order to correctly duplicate the DNA and to deliver the newly duplicated genomes to the two daughter cells during mitosis. Cell cycle regulatory components most likely have a bifunctional role in plants. In addition to regulation of the cell cycle process itself, they are involved in the coordination of cell division in the context of a developing organism. Furthermore, at almost every cell cycle, dividing cells at the meristems must integrate development and environmental cues in order to decide whether to go on in another division cycle or to start a new developmental program. CDK/Cyclin activity regulates the transition through cell cycle checkpoints and thereby plant growth and development, and is itself under control of a variety of upstream modules. One of these is the Anaphase Promoting Complex (APC/C), which is an E3 ubiquitin ligase that controls CDK activity by mitosis-promoting cyclins. Besides the well recognized role of the APC during the mitotic cycle, there is increasing evidence that the APC plays a critical role during cell differentiation and development.Here, we show that ectopic expression of the C-terminus portion of the Arabidopsis APC7 subunit accelerates overall plant growth and results in plants with increased biomass production. In addition, the resulting plants are also tolerant to the CaLCuV geminivirus. These results indicate that the APC play active roles in regulation of plant growth and raise the intriguing possibility that the APC may mediate plant immune responses. [mehr]
Plant mitochondria differ significantly from those found in other organisms which has led to the evolution of distinct strategies for genome maintenance, genetic coding, gene regulation, organelle segregation and also protein import pathways. The mitochondrial import apparatus is composed of a number of evolutionary related multi-subunit protein complexes that recognize, translocate and assemble mitochondrial proteins. Our recent work has shown that the translocation pathways found in plant mitochondria are notably different compared to those of other model organisms. We have recently discovered that plant mitochondria contain an essential Twin arginine translocation pathway within the inner membrane. This mitochondrial Tat pathway is at least responsible for the translocation of the Rieske Fe/S protein from complex III but may also have other substrates. Plant mitochondria also contain four members of the YidC/Oxa1/Alb3 family of proteins in contrast to other organisms which normally only contain two. It has been demonstrated that three of these plant Oxa proteins namely Oxa1A, Oxa2A and Oxa2B are essential. The Oxa2A and Oxa2B proteins are unique to the plant kingdom in that they harbor TPR repeats at their C-termini. Our recent work has demonstrated that while the proteins are essential the TPR domain is not. Plants complemented with Oxa2 proteins lacking the TPR domain are viable but severely developmentally delayed. Our recent results in studying the roles and functions of Oxa proteins and the mitochondrial Tat pathway in plant mitochondrial biogenesis will be discussed. [mehr]

Pablo Iván Nikel - Harnessing the metabolic potential of environmental bacteria using SynBio tools

The last few years have witnessed an exponential increase in the number of bacteria that can be used as microbial cell platforms in practical applications. The microorganisms which are the easiest to manipulate genetically (i.e., the so-called "model" bacteria, such as Escherichia coli or Bacillus subtilis) are often not adequate to perform given biotechnological applications (e.g., harsh oxidations or dehalogenation reactions). Contemporary Synthetic Biology endeavors rely on the adoption of specific bacterial chasses for plugging-in and -out genetic circuits and engineer new-to-Nature functionalities. Against this background, environmental bacteria, such as Pseudomonas strains, constitute ideal starting points to design flawless microbial cell platforms, since these microorganisms are pre-endowed with a number of metabolic and stress-endurance traits that are optimal for biotechnological needs. Recent developments on the taming of P. putida for biotechnological applications will be discussed in the context of Synthetic Biology strategies for [i] re-designing the metabolic architecture of central carbon catabolism and [ii] manipulating catalytic biofilms through Synthetic Morphology approaches. [mehr]

A. Harvey Millar - Protein degradation and synthesis rates in leaf growth and development to understand energy use and the maintenance of enzyme function

Proteome studies focus almost exclusively on measuring abundance of proteins and documenting the fact that abundance changes in specific circumstances. This requires detection of statistically significant changes in the protein pool sizes to show that ‘something has occurred’. Protein abundance data are then sandwiched in systems biology models as a layer between transcript responses and metabolite levels. Analysing protein synthesis and degradation rates with progressive stable isotope labelling provides a new window into the control of protein abundance and the energy expended in maintaining the steady-state proteome across genotypes, development and environments1. It provides the first and second derivative of protein abundance with respect to time: how fast are proteins turning over to achieve steady-state or gaining or lowering abundances and do these speeds differ in response to development or the environment? This approach can also enable the relative age distribution of a protein population to be assessed. This has implications for the energetic effort employed by the cell to build or maintain a particular activity and gives clues to the impact of age on the function in different protein types. We are using progressive 15N labelling of Arabidopsis to provide a birds-eye view of the activity of the proteolysis network as it maintains and sculpts the plant proteome. Using peptide mass spectrometry, the progressive labelling of new peptides and the decrease in the abundance of peptides with natural isotope profiles enabled the degradation rate of 1228 leaf proteins to be determined by combining over 60,000 peptide relative isotope abundance (RIA) measurements2. The exponential constant of the decay rate (KD) for each protein during growth showed a wide distribution, ranging from 0 to 2 per day, which was equivalent to protein half-lives of several hours to several months. We are also using this approach to dissect the in vivo action of proteases through analysis of knockout mutants3.We have found new rapidly degrading subunits in a variety of protein complexes, identified the set of plant proteins whose degradation rate correlated positively or negatively with leaf growth rate, calculated the protein turnover energy costs for different leaves and their key determinants within the proteome, and are beginning to interpret transcriptome analyses from the point-of-view of maintenance of the proteome. [mehr]

Karen B. Barnard-Kubow - Patterns of organelle inheritance and genome evolution: characterizing the evolutionary dynamics of a cytonuclear incompatibility

Negative interactions between the organelle and nuclear genomes (cytonuclear incompatibility) are thought to be among the early genetic incompatibilities to arise during speciation. While there are now several good examples of cytonuclear incompatibility leading to reproductive isolation within and between closely related species, there are still many unanswered questions regarding the evolutionary dynamics of cytonuclear incompatibility. Using the herbaceous species Campanulastrum americanum, I examine how patterns of organelle inheritance and rates of organelle genome evolution may both facilitate and constrain the evolution of cytonuclear incompatibility and its ability to drive the early stages of speciation. [mehr]

Ari Pekka Mähönen - Cell Fate Decisions in the Arabidopsis Root Cambium

Despite the importance of the vascular cambium in plant biology and in wood production, the molecular and cellular mechanisms underlying cambial activity remain largely unknown. Particularly, it is unknown where the cambial stem cells are located, and how the stem cell niche is organized to drive cambial growth.In animal stem cell studies lineage tracing has been the method for locating the stem cells. In this method single cell clones marked with reporter expression are generated within a population of dividing cells. The clones are transmitted to all daughter cells of the initial cell, resulting in a marked sector within the tissue. By analysing the size and distribution of the sectors the position and the mitotic activity of dividing cells and stem cells can be deduced. In order to understand the cell lineage relations in the Arabidopsis root cambium, we generated GUS/GFP sectors by using two step CRE-lox based clonal activation system. To understand which cells in the primary tissue contribute to the cambium formation we induced single cell clones during the primary development of the root and analysed the growing sectors during the secondary development. We also generated marked sectors in active cambium to map the position of stem cells and to understand the growth dynamics of the cambial cells. In my seminar presentation I will explain how we are utilizing the lineage tracing data to provide mechanistic understanding of cambium regulation. [mehr]

Keiko Sugimoto - Epigenetic control of plant cell reprogramming

March 2017
Many plant species display remarkable developmental plasticity and regenerate new organs after injury. Local signals produced by wounding are thought to trigger organ regeneration but molecular mechanisms underlying this control remain largely unknown1,2. We have previously identified a group of AP2/ERF transcription factors named WOUND INDUCED DEDIFFERENTIATION1-4 (WIND1-4) as central regulators of wound-induced cellular reprogramming in plants3. More recently we demonstrated that WIND1 promotes shoot regeneration by directly up-regulating ENHANCER OF SHOOT REGENERATION1 (ESR1) encoding another AP2/ERF transcription factor in Arabidopsis4. We have also shown that some of WIND genes and other developmental regulators need to be epigenetically repressed by POLYCOMB REPRESSIVE COMPLEX 2 to prevent unscheduled cellular reprogramming in intact plants5,6. In this talk I will discuss our latest findings on how WIND proteins promote cellular reprogramming and how wound stress activates the WIND-mediated pathway by overriding epigenetic repression. [mehr]

Shizue Matsubara - Long-term acclimation of Arabidopsis to highly fluctuating light environment

Natural light environment is highly variable in both intensity and spectral quality. The light intensity can vary between zero (night) and >2000 μmol photons m-2 s-1 (full sunlight) as the earth rotates, weather changes and wind moves branches and leaves. Upon sudden and large increase in light intensity, photosynthesis is limited biochemically, e.g. by the activation state of RubisCO and the availability of the Calvin-Benson cycle intermediates or inorganic phosphate for ATP synthesis. Low stomatal conductance may also limit plant’s capacity to utilize additional light energy for photosynthesis. When put under highly fluctuating light conditions for days, Arabidopsis plants primarily or initially downregulate photosynthetic light harvesting and linear electron transport while upregulating photoprotection at the expense of carbon gain and growth. Towards understanding the mechanisms of long-term acclimation to highly fluctuating light environment, we studied leaf transcriptome, metabolome and proteome of Arabidopsis (Columbia wild type). Plants were exposed to highly fluctuating light or constant light condition for 3 or 7 days to focus on long-lasting (non-transient) acclimatory changes and downstream responses that may give rise to the phenotypic alterations. Given the pronounced diurnal and circadian variations in leaf metabolism and gene expression, samples were taken at two contrasting time points during the light period in the 12 h/12 h light/dark cycle, namely, early morning and at the end of the day. Furthermore, young and mature leaves were analyzed separately as they typically differ in the photosynthetic capacity. Overall, our results underscore photo-oxidative stress responses and mitigation of acceptor-side limitation to photosynthesis during acclimation to highly fluctuating light. The gene expression profiles revealed distinct responses of young and mature leaves in the morning and at the end of the day, indicating crosstalk between long-term acclimation, leaf development and circadian clock. In particular, I will highlight the changes related to the components of photosynthesis and photoprotection. [mehr]

Ben Field - An unusual nucleotide is a potent controller of chloroplast function that regulates plant growth and development

The chloroplast originated from the endosymbiosis of an ancient photosynthetic bacterium by a eukaryotic cell. Remarkably, the chloroplast has retained elements of a bacterial stress response pathway that is mediated by the signaling nucleotides guanosine penta- and tetraphosphate (ppGpp). However, an understanding of the mechanism and outcomes of ppGpp signaling in the photosynthetic eukaryotes has remained surprisingly elusive. I will present our findings in the model plant Arabidopsis thaliana where we recently showed that ppGpp is a potent regulator of chloroplast gene expression in vivo that directly reduces the quantity of chloroplast transcripts and chloroplast-encoded proteins. We were also able to demonstrate that the antagonistic functions of different plant RelA SpoT homologs (RSHs) together modulates ppGpp levels to regulate chloroplast function, and RSHs are required for optimal plant growth, chloroplast volume, and chloroplast breakdown during dark-induced and developmental senescence. Together our results strongly suggest that ppGpp signaling is not only linked to stress responses in plants but is also an important mediator of cooperation between the chloroplast and the nucleocytoplasmic compartment during plant growth and development. [mehr]

Antonio Granell - Untangling the fruit volatile network

Despite the important contribution of volatile compounds to fruit flavor we still know very little about the molecular genetic basis for volatile production in most fruits. Research using a combination of omics and well characterized genetic resources is changing this situation. I will present some examples of our work on different fruit species that reveals important genome regions and genes for volatile production that can be used for breeding and biotech approaches. [mehr]

Matsuo Uemura - Role of light signals in freezing tolerance mechanism in plants: interactions with temperature signals

Temperate herbaceous plants sense environmental changes during fall and increase their freezing tolerance, which is critical for survival over winter. This process, called as cold acclimation (CA), has been known to be mainly regulated by changes in temperature in season. However, changes in air temperature has been unpredictable and often show sudden risings and/or drops, which is worsened with global climate changes. Light conditions, in addition to lowering temperature, are known as another important factor to regulate CA and, in fact, shortening the day length as well as changes in red/far red light conditions affects the extent of CA. However, effects of light quality and the combination of temperature and light remain to be studied in detail. With Arabidopsis, we here report that light conditions (blue light as well as red light) and temperature conditions in day and night periods (constant vs fluctuated) influence freezing tolerance in complex way. We will discuss elaborate systems for plants to prepare for winter beforehand even under unpredictable climate conditions in the global climate change era. [mehr]

Salim Al Babili - Carotenoids Conversion: It matters where you cut

Carotenoids are characterized by a conjugated double bond system responsible for their vital role in photosynthesis and their colors. This system is also the basis for the function of carotenoids as a platform for the formation of various important compounds, such as retinal, abscisic acid and other signaling molecules. A further example is represented by strigolactones, a novel class of plant hormones that also mediate rhizospheric interactions with root parasitic weeds and mycorrhizal fungi. Carotenoid-derived compounds (apocarotenoids) arise by oxidative cleavage of double bonds, which is catalyzed by Carotenoid Cleavage Dioxygenases (CCDs). CCDs produce compounds with different physicochemical characteristics and biological functions, depending on the site of cleavage. The strigolactone biosynthesis enzyme CCD8 is unusual CCD since it catalyzes the cleavage of a single bond, in combination with other different reactions. In this talk, we will give an overview about apocarotenoid formation, focusing on the biosynthesis of striglactones. We will also show how basic knowledge about this pathway can be applied to combat root parasitic weeds. [mehr]

Siobhan M. Brady - Transcriptional regulation of plant metabolism

Regulation of plant development requires intricate communication with both primary and specialized metabolism in order to fuel growth. While transcriptional regulation of metabolism is evident from myriad whole genome-expression analyses, our understanding of which transcriptional regulators are responsible for these changes as well as their underlying mode of action is unclear. I will highlight our efforts on systematic mapping of transcriptional regulators of nitrogen metabolism, the tricarboxylic acid cycle and glucosinolate biosynthesis. Network analyses incorporating protein-DNA interaction data, gene expression and connectivity were used to identify critical regulators, most of which were shown to regulate growth and metabolism in planta. Finally, these analyses have shed light on modularity within these pathways and global perspectives on this additional mode of plant metabolic regulation. [mehr]

Sam Seeman - Protein Targeting to STarch: A new class of proteins that bring enzymes and substrates together

Starch is a vital plant product, being the major nutritive component of our staple crops and an important feedstock for industry. Starch takes the form of insoluble, semi-crystalline granules composed of two glucose polymers: branched amylopectin and near-linear amylose. Amylopectin, the major component, is responsible for the semi-crystalline nature of starch. It is made by a set of enzymes; starch synthases, branching enzymes and debranching enzymes. In contrast, amylose is made within the amylopectin matrix by a single enzyme – Granule-Bound Starch Synthase (GBSS) – that becomes trapped as amylopectin crystalizes about it. There is much that we still do not understand about starch biosynthesis, such as how the enzyme activities are coordinated and how starch granules are first initiated. We recently discovered that a new class of proteins is required to localize some of the Starch Synthase activities. We called these proteins PTST (for Protein Targeting to Starch). Arabidopsis has three PTSTs. PTST1 binds GBSS and delivers it to the starch granule surface, whereupon it dissociates and leaves GBSS to synthesise amylose. In the absence of PTST1, GBSS fails to localize to the granule and the starch is composed solely of amylopectin. In contrast, PTST2 and PTST3 bind to another starch synthase, SS4, which is implicated in starch granule initiation. Defects in SS4 or in PTST2/3 significantly alter the number, size and shape of starch granules without necessarily affecting the structure or ratio of the constituent polymers. We believe that these PTSTs bind low-abundance precursors from a pool of malto-oligosaccharides and deliver them to SS4 for elaboration into starch granule initials. In this talk I will summarize these and other results which shed new light onto how plants make starch. [mehr]

Marja Timmermans - Small RNAs as mobile, morphogen-like signals in development

Abstract: Small RNAs as mobile, morphogen-like signals in development Damianos Skopelitis1, Anna Benkovics1, Aman Husbands1 and Marja Timmermans1,2 1) Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA 2) Center for Plant Molecular Biology, University of Tuebingen, Auf der Morgenstelle 32, 72076 Tuebingen, Germany Adaxial-abaxial (top-bottom) polarity drives the flattened outgrowth and patterning of leaves, and represents an important innovation in the evolution of land plants. Patterning of this axis is driven by an intricate gene regulatory network. Integral to this network are two sets of conserved transcription factors that promote either adaxial or abaxial fate, and are expressed in complementary domains on the top or bottom side of the leaf, respectively. The positional information needed to delineate these domains is provided in part by the small RNAs miR166 and tasiR-ARF. We have shown that these small RNAs move outside their defined domain of biogenesis and form opposing gradients across the leaf that polarize expression of key adaxial- and abaxial-promoting transcription factors, HD-ZIPIII and ARF3/4, respectively. Our observations, which will be presented, indicate that mobile small RNAs have the inherent capacity to generate sharp gene expression boundaries, and function as morphogen-like signals in development. Their patterning properties present small RNAs and their targets as highly portable regulatory modules through which to create pattern, and provides a compelling basis for the extensive conservation and repeated co-option of developmentally important small RNA-target modules. [mehr]

Steve Penfield - Control of progeny seed behaviour by the mother plant

Abstract: During reproduction the mother plant uses environmental signals to modulate the dormancy and behaviour of her progeny seeds. This presentation will explore the importance of this process in plant evolutionary biology, and discuss what is known about the underlying molecular mechanisms. Key data will point to an ancient role of flowering time genes in seed biology, which may precede the co-option of these genes into reproductive processes that evolved later, such as flowering itself. Using natural variation to study seed dormancy I will raise the prospect that a parental conflict exists at the heart of seed dormancy and growth vigour, and therefore that mothers and fathers have different optimised fates for progeny seeds. We can speculate a bit as to why this might be and the implications for crop science. [mehr]

Zach Adam - Deg proteases in the thylakoid lumen - are they 'more of the same'?

January 2017
Prokaryotic Deg (HtrA) proteases are involved in protein quality control and response to stress [1]. The Arabidopsis thaliana genome contains 16 Deg genes whose products are distributed in chloroplasts, mitochondria, peroxisomes and the nucleus [2]. Deg2 and Deg7 are located in the chloroplast stroma, whereas Deg1, Deg5 and Deg8 are found in the thylakoid lumen. Deg1 forms active homo-hexamers at acidic pH, degrading photosynthetic proteins, especially in relation to the PSII repair cycle [3,4]. Deg5 and Deg8 form hetero-complexes, performing apparently similar functions [5], raising the question whether the two complexes are redundant. To answer this, we generated a full set of single, double and triple KO mutants and compared their phenotypes. We found that under optimal growth conditions Deg5-Deg8 mutants look like WT, but Deg1 mutants are smaller and show higher sensitivity to photoinhibition. Under harsher conditions, Deg5-Deg8 mutants are also affected, although less than Deg1 mutants. However, the functions of the two complexes are somewhat redundant, as overexpression of Deg5-Deg8 can partially compensate for the loss of Deg1. Comparative proteomics revealed in the triple mutant moderate up-regulation of thylakoid proteins involved in folding, translocation, assembly and degradation, and down-regulation of components of all photosynthetic complexes. Testing the steady-state level of the thylakoid Deg proteases in WT plants demonstrated that Deg1 is approximately two-fold more abundant than the Deg5-Deg8 complex. Moreover, recombinant Deg1 had higher in vitro proteolytic activity compared with Deg5, Deg8 and the combination of the two. These results suggest that the differences in abundance and proteolytic activity are the source of the differential importance of the two complexes in vivo. [mehr]

Paolo Pesaresi - GUN1, a Jack-Of-All-Trades in Chloroplast Protein Homeostasis and Signaling

Dezember 2016
Abstract: The GENOMESUNCOUPLED1 (GUN1) gene has been reported to encode a chloroplast-localized pentatricopeptide-repeat protein, which acts to integrate multiple indicators of plastid developmental stage and altered plastid function, as part of chloroplast-to-nucleus retrograde communication. However, the molecular mechanisms underlying signal integration by GUN1 have remained elusive, up until the recent identification of a set of GUN1-interacting proteins, by co-immunoprecipitation and mass-spectrometric analyses, as well as protein–protein interaction assays. Here, we review the molecular functions of the different GUN1 partners and propose a major role for GUN1 as coordinator of chloroplast translation, protein import, and protein degradation. This regulatory role is implemented through proteins that, in most cases, are part of multimeric protein complexes and whose precise functions vary depending on their association states. Within this framework, GUN1 may act as a platform to promote specific functions by bringing the interacting enzymes into close proximity with their substrates, or may inhibit processes by sequestering particular pools of specific interactors. Furthermore, the interactions of GUN1 with enzymes of the tetrapyrrole biosynthesis (TPB) pathway support the involvement of tetrapyrroles as signaling molecules in retrograde communication. [mehr]

Jenny Russinova - Trafficking of Plant Receptor Kinases: When the Intracellular Logistics Matters

Abstract: Receptor-mediated endocytosis is an integral part of signal transduction, as besides signal attenuation, by removal of activated receptors and their bound ligands from the cell surface, it allows the spatial and temporal regulation of the signaling outputs from the endosomes. After receptors have been activated and internalized, they can be separated from their ligands and recycled back to the plasma membrane or transported for degradation. Crucial in the study of the interplay between endocytosis, recycling, and signaling of plant receptor kinases is the development of imaging tools (bioactive fluorescent probes) to visualize membrane-associated signaling events at a high spatiotemporal resolution. Recently, we have been able to view endocytosis of different receptor kinases in living Arabidopsis thaliana cells using fluorescent small-molecule and peptide ligands. In addition, we are exploring the chemical biology for development of novel specific endocytosis inhibitors that will contribute to the better understanding of how this process regulates signaling outputs in plants. [mehr]

Magalie Uyttewaal - Regulation of Plant Cell Growth and Division by new Family of Microtubule Associated Proteins

Abstract:The presence of reproducible developmental patterns and shapes in plants underlies mechanisms that ensure the robustness and coordination of cellular processes such as cell division orientation and cell growth. When a plant cell divides, a new wall is built that connects existing ones and separates daughter cytoplasms. This wall firmly binds every plant cell to its neighbors and prevents any migration. As a consequence, the topology of plant tissues mostly results from the orientation of mitoses and cell growth. Every aspects of cell growth and division involve the microtubule cytoskeleton with specialized microtubule arrays that accompany each stage of plant cell development.We have identified a major organizer of cortical microtubule arrays, the TTP complex (which contains TON1, TRM and PP2A proteins), and were able to uncouple its role in interphase from its role in mitosis by isolating specific G2/M and interphasic isoforms. The contributions of these specialized isoforms to the robustness of cell growth, cell division and plant development will be presented. [mehr]

Łucja Kowalewska - 3D Visualization of Thylakoid Membrane Development

Abstract: Chloroplast biogenesis is a complex process that is integrated with plant development, leading to fully differentiated and functionally mature plastids. At the structural level of chloroplast biogenesis, the regular network of paracrystalline prolamellar bodies (PLBs) and the flattened porous membranes of prothylakoids develop into the chloroplast thylakoids. Three-dimensional reconstruction is required to provide us with a more complete understanding of this transformation. We used electron tomography and confocal microscopy to reconstruct the process of structural membrane transformation during the etioplast-to-chloroplast transition in runner bean (Phaseolus coccineus). We also point out the importance of particular chlorophyll-protein complex components in the membrane appression during the subsequent stages of biogenesis process. We provide 3D models of the bean chloroplast biogenesis that allow spatial reconstruction of the internal membranes of the developing chloroplast and visualize the transformation from the tubular arrangement to the linear system of parallel lamellae. The results show that the transformation of PLBs consists of the untwining of tubules from the PLB structure in a continuous process, without dispersion to vesicles. The tubular structure of the PLB transforms directly into flat slats that eventually form grana. We demonstrate that grana membranes, from the beginning of their formation, associate with stroma thylakoids in a helical way. The main structural stages of chloroplast internal membrane biogenesis are presented in a movie that shows the time development of the chloroplast biogenesis as a theoretical dynamic model of this process. [mehr]

Michael Knoblauch - New Insights on the Physiology and Cell Biology of Phloem Transport and Unloading

Abstract: Vascular systems allow organisms to distribute resources internally by bulk flow and thus to overcome size limitations set by diffusion. In plants, the evolution of vascular tissues enabled the development of trees and forests and was accompanied by a major increase in the productivity of terrestrial ecosystems. The process of phloem transport and unloading plays a critical role in allocating photoassimilates to sinks which in form of cereals, tubers, roots etc. represent the major food sources for humans. The cellular processes of phloem transport and allocation control at the site of phloem unloading, however, are hardly investigated and poorly understood. Recent data suggest that the current model of phloem unloading - the high pressure manifold model - does not accurately describe the events in the unloading zone. New data on the physiology and cell biology of phloem transport and unloading will be pressented. [mehr]

Gary Stacey - Application of soybean genomic tools to the study of the nitrogen fixing, rhizobium symbiosis

The successful completion of the soybean genome sequence in 2010 enabled the application of the full range of genomic tools and methods to the study of the nitrogen fixing rhizobial symbiosis. This symbiosis is the result of infection of soybean roots by the soil bacterium, Bradyrhizobium japonicum. In order to more precisely study the early infection events during the establishment of this symbiosis, my laboratory pioneered the use of isolated root hair cells as a single cell model for systems biology. We have applied the full repertoire of functional genomic methods to this system characterizing, for example, the transcriptome, proteome, phosphoproteome, miRNA, DNA methylation, and others. These studies, within the context of a general focus on soybean genomics, has enabled us to compile a large dataset, which has provided novel insight into the mechanisms by which the nitrogen fixing symbiosis is established. Among these important insights is the growing realization that the plant innate immunity system plays an important role in the symbiosis. [mehr]
At the interface of plant science, policy, economy and public - and how to get thereScience management and communication are key elements of successful research programs. PLANT 2030 is a BMBF funded competence network of applied plant science in Germany as well as international collaborations. In the managing office, we interconnect plant scientists and we are the central hub for the communication between science, policy, plant breeding and the public. In our talk, we will give insights into our day-to-day business as well as strategies in the longer term. We will examine different ways of career development in our field giving examples of educational programs as well as trainings on the job. All three of us having different vocational backgrounds, we cover a range of expertise and will give you an overview on diverse job opportunities in the heterogeneous field of science management and communication. [mehr]

Jane Mellor - Gene Regulation: Sense, antisense and non-coding transcription and transcript fate

November 2016
Eukaryotic genomesare pervasively transcribed in gene rich regions leading to the production of avariety of transcripts including coding pre-mRNAs, antisense transcripts, di-cistronic transcripts and other long non-coding transcripts. We havediscovered that many transcripts are unstable, or are retained in thenucleus, raising interesting questions about how the differential fate oftranscripts is determined. Using Saccharomyces cerevisiae as a model system, firstwe show that the Isw1 chromatin remodelling ATPase retains poorly processedtranscripts in the nucleus. Second, we have developed a novel nucleotideresolution, strand-specific technique to map the association oftranscription elongation factors with RNA polymerase II. We show thatlevels of Paf1 on RNA polymerase II contribute to the fate of the encodedtranscripts, with low levels associated with nuclear retention oftranscripts. Finally using mathematical modelling, we show how antisensetranscription influences sense transcription and transcripts. [mehr]
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