Zeitschriftenartikel (208)

151.
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Martinez-Seidel, F.; Suwanchaikasem, P.; Nie, S.; Leeming, M.G.; Firmino, A.; Williamson, N.A.; Kopka, J.; Roessner, U.; Boughton, B.A.: Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, 656683 (2021)
152.
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Mbebi, A. J.; Tong, H.; Nikoloski, Z.: L2,1-norm regularized multivariate regression model with applications to genomic prediction. Bioinformatics 37 (18), S. 2896 - 2904 (2021)
153.
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McFarlane, H. E.; Mutwil-Anderwald, D.; Verbančič, J.; Picard, K.L.; Gookin, T.E.; Fröhlich, A.; Chakravorty, D.; Trindade, L.M.; Alonso, J.M.; Assmann, S.M. et al.; Persson, S.: A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis. Developmental Cell 56 (10), S. 1484 - 1497.e7 (2021)
154.
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Meitzel, T.; Radchuk, R.; McAdam, E.L.; Thormählen, I.; Feil, R.; Munz, E.; Hilo, A.; Geigenberger, P.; Ross, J.J.; Lunn, J. E. et al.; Borisjuk, L.: Trehalose 6-phosphate promotes seed filling by activating auxin biosynthesis. New Phytologist 229 (3), S. 1553 - 1565 (2021)
155.
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Melo, T.O.; Franciscon, L.; Brown, G.; Kopka, J.; Cunha, L.; Martinez-Seidel, F.; Madureira, L.A.D.S.; Hansel, F.A.: Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, 100719 (2021)
156.
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Mengarelli, D.A.; Roldán Tewes, L.; Balazadeh, S.; Zanor, M.I.: FITNESS Acts as a Negative Regulator of Immunity and Influences the Plant Reproductive Output After Pseudomonas syringae Infection. Frontiers in Plant Science 12, 606791 (2021)
157.
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Méteignier, L.-V.; Ghandour, R.; Zimmerman, A.; Kuhn, L.; Meurer, J.; Zoschke, R.; Hammani, K.: Arabidopsis mTERF9 protein promotes chloroplast ribosomal assembly and translation by establishing ribonucleoprotein interactions in vivo. Nucleic Acids Research (London) 49 (2), S. 1114 - 1132 (2021)
158.
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Moreno, J. C.; Martinez-Jaime, S.; Kosmacz, M.; Sokolowska, E. M.; Schulz, P.; Fischer, A.; Luzarowska, U.; Havaux, M.; Skirycz, A.: A Multi-OMICs Approach Sheds Light on the Higher Yield Phenotype and Enhanced Abiotic Stress Tolerance in Tobacco Lines Expressing the Carrot lycopene β-cyclase1 Gene. Frontiers in Plant Science 12, 624365 (2021)
159.
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Mou, J.; Zhang, Z.; Qiu, H.; Lu, Y.; Zhu, X.; Fan, Z.; Zhang, Q.; Ye, J.; Fernie, A. R.; Cheng, Y. et al.; Deng, X.; Wen, W.: Multiomics-based dissection of citrus flavonoid metabolism using a Citrus reticulata × Poncirus trifoliata population. Horticulture Research 8 (1), 56 (2021)
160.
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Neupert, J.; Gallaher, S.D.; Lu, Y.; Strenkert, D.; Segal, N.; Barahimipour, R.; Fitz-Gibbon, S.T.; Schroda, M.; Merchant, S.S.; Bock, R.: Publisher Correction: An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonasis (Nature Communications, (2020), 11, 1, (6269), 10.1038/s41467-020-19983-4). Nature Communications 12 (1), 208 (2021)
161.
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Olas, J. J.; Apelt, F.; Watanabe, M.; Hoefgen, R.; Wahl, V.: Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation. Plant Science 303, 110746 (2021)
162.
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Omidbakhshfard, M. A.; Sokolowska, E.; Di Vittori, V.; de Souza, L. P.; Kuhalskaya, A.; Brotman, Y.; Alseekh, S.; Fernie, A. R.; Skirycz, A.: Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2 (4), 100235 (2021)
163.
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Omranian, N.; Angeleska, A.; Nikoloski, Z.: PC2P: parameter-free network-based prediction of protein complexes. Bioinformatics 37 (1), S. 73 - 81 (2021)
164.
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Paterlini, A.; Dorussen, D.; Fichtner, F.; van Rongen, M.; Delacruz, R.; Vojnović, A.; Helariutta, Y.; Leyser, O.: Callose accumulation in specific phloem cell types reduces axillary bud growth in Arabidopsis thaliana. New Phytologist 231 (2), S. 516 - 523 (2021)
165.
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Pereira, L.; Sapkota, M.; Alonge, M.; Zheng, Y.; Zhang, Y.; Razifard, H.; Taitano, N. K.; Schatz, M. C.; Fernie, A. R.; Wang, Y. et al.; Fei, Z.; Caicedo, A. L.; Tieman, D. M.; van der Knaap, E.: Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science 12, 642828 (2021)
166.
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Pérez-Díaz, J.; Batista-Silva, W.; Almada, R.; Medeiros, D. B.; Arrivault, S.; Correa, F.; Bastías, A.; Rojas, P.; Beltrán, M. F.; Pozo, M. F. et al.; Araújo, W. L.; Sagredo, B.: Prunus Hexokinase 3 genes alter primary C-metabolism and promote drought and salt stress tolerance in Arabidopsis transgenic plants. Scientific Reports 11, 7098 (2021)
167.
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Pries, C.; Razaghi-Moghadam, Z.; Kopka, J.; Nikoloski, Z.: Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11 (1), 4787 (2021)
168.
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Rasul, F.; Gupta, S.; Olas, J.J.; Gechev, T.; Sujeeth, N.; Mueller-Roeber, B.: Priming with a seaweed extract strongly improves drought tolerance in arabidopsis. International Journal of Molecular Sciences 22 (3), 1469 (2021)
169.
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Razaghi-Moghadam, Z.; Sokolowska, E.; Sowa, M.A.; Skirycz, A.; Nikoloski, Z.: Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 19, S. 2170 - 2178 (2021)
170.
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Ren, Y.; Li, M.; Guo, S.; Sun, H.; Zhao, J.; Zhang, J.; Liu, G.; He, H.; Tian, S.; Yu, Y. et al.; Gong, G.; Zhang, H.; Zhang, X.; Alseekh, S.; Fernie, A. R.; Scheller, H. V.; Xu, Y.: Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell 33 (5), S. 1554 - 1573 (2021)
171.
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Ruf, S.; Kroop, X.; Bock, R.: Chloroplast Transformation in Arabidopsis. Current Protocols in Plant Biology 1 (4), e103 (2021)
172.
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Salem, M. A.; Ezzat, S. M.; Giavalisco, P.; Sattar, E. A.; El Tanbouly, N.: Application of a comprehensive metabolomics approach for the selection of flaxseed varieties with the highest nutritional and medicinal attributes. Journal of Food and Drug Analysis 29 (2), 3 (2021)
173.
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Salem, M. A.; Zayed, A.; Alseekh, S.; Fernie, A. R.; Giavalisco, P.: The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe. Phytochemistry 190, 112843 (2021)
174.
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Samo, N.; Ebert, A.; Kopka, J.; Mozgová, I.: Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, 102002 (2021)
175.
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Sánchez-Guerrero, A.; Nadal, M.; Florez-Sarasa, I.; Ribas-Carbó, M.; Vallarino, J. G.; Brasi-Velasco, S. D.; Fernie, A. R.; Flexas, J.; Jiménez, A.; Sevilla, F.: Decreased Levels of Thioredoxin o1 Influences Stomatal Development and Aperture but Not Photosynthesis under Non-Stress and Saline Conditions. International Journal of Molecular Sciences 22 (3), 1063 (2021)
176.
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Sandoval-Ibanez, O.; Sharma, A.; Bykowski, M.; Borràs-Gas, G.; Behrendorff, J. B. Y. H.; Mellor, S.; Qvortrup, K.; Verdonk, J. C.; Bock, R.; Kowalewska, Ł. et al.; Pribil, M.: Curvature thylakoid 1 proteins modulate prolamellar body morphology and promote organized thylakoid biogenesis in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 118 (42), e2113934118 (2021)
177.
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Sangpong, L.; Khaksar, G.; Pinsorn, P.; Oikawa, A.; Sasaki, R.; Erban, A.; Watanabe, M.; Wangpaiboon, K.; Tohge, T.; Kopka, J. et al.; Hoefgen, R.; Saito, K.; Sirikantaramas, S.: Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 12, 687799 (2021)
178.
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Schaarschmidt, S.; Lawas, L.M.F.; Kopka, J.; Jagadish, S. V. K.; Zuther, E.: Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 44 (7), S. 2034 - 2048 (2021)
179.
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Scheffen, M.; Marchal, D.G.; Beneyton, T.; Schuller, S.K.; Klose, M.; Diehl, C.; Lehmann, J.; Pfister, P.; Carrillo, M.; He, H. et al.; Aslan, S.; Cortina, N.S.; Claus, P.; Bollschweiler, D.; Baret, J.-C.; Schuller, J.M.; Zarzycki, J.; Bar-Even, A.; Erb, T.J.: A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation. Nature Catalysis 4, S. 105 - 115 (2021)
180.
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Scheurer, N.; Rajarathinam, Y.; Timm, S.; Kobler, C.; Kopka, J.; Hagemann, M.; Wilde, A.: Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 12, 675227 (2021)
181.
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Schillaci, M.; Kehelpannala, C.; Martinez-Seidel, F.; Smith, P. M. C.; Arsova, B.; Watt, M.; Roessner, U.: The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status. Metabolites 11 (6), 358 (2021)
182.
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Schneider, R.; Klooster, K.; Picard, K.L.; van der Gucht, J.; Demura, T.; Janson, M.; Sampathkumar, A.; Deinum, E.E.; Ketelaar, T.; Persson, S.: Long-term single-cell imaging and simulations of microtubules reveal principles behind wall patterning during proto-xylem development. Nature Communications 12 (1), 669 (2021)
183.
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Schultz, S.W.; Agudo-Canalejo, J.; Chino, H.; Migliano, S.M.; Saito, C.; Koyama-Honda, I.; Stenmark, H.; Brech, A.; Mizushima, N.; Knorr, R. L. et al.; May, A.I.: Should I bend or should I grow: the mechanisms of droplet-mediated autophagosome formation. Autophagy 17 (4), S. 1046 - 1048 (2021)
184.
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Schulz, E.; Tohge, T.; Winkler, J. B.; Albert, A.; Schäffner, A. R.; Fernie, A. R.; Zuther, E.; Hincha, D. K.: Natural Variation among Arabidopsis Accessions in the Regulation of Flavonoid Metabolism and Stress Gene Expression by Combined UV Radiation and Cold. Plant and Cell Physiology 62 (3), S. 502 - 514 (2021)
185.
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Schumacher, C.; Krannich, C. T.; Maletzki, L.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Seddig, S.; Peters, R.; Hamera, S. et al.; Zuther, E.; Haas, M.; Horn, R.: Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 12 (4), 494 (2021)
186.
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Schumacher, C.; Thümecke, S.; Schilling, F.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Walther, D.; Seddig, S.; Peters, R. et al.; Zuther, E.; Haas, M.; Horn, R.: Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.). International Journal of Molecular Sciences 22 (11), 6123 (2021)
187.
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Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)
188.
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Scossa, F.; Fernie, A. R.: Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, S. 1579 - 1594 (2021)
189.
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Seep, L.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis. Scientific Reports 11, 8544 (2021)
190.
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Shivhare, D.; Musialak-Lange, M.; Julca, I.; Gluza, P.; Mutwil, M.: Removing auto-activators from yeast-two-hybrid assays by conditional negative selection. Scientific Reports 11, 5477 (2021)
191.
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Staykov, N. S.; Angelov, M.; Petrov, V.; Minkov, P.; Kanojia, A.; Guinan, K. J.; Alseekh, S.; Fernie, A. R.; Sujeeth, N.; Gechev, T. S.: An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11 (1), 24 (2021)
192.
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Takahashi, D.; Johnson, K.; Hao, P.; Tuong, T.; Erban, A.; Sampathkumar, A.; Bacic, A.; Livingston III, D. P.; Kopka, J.; Kuroha, T. et al.; Yokoyama, R.; Nishitani, K.; Zuther, E.; Hincha, D. K.: Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 44 (3), S. 915 - 930 (2021)
193.
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Tedesco, S.; Erban, A.; Gupta, S.; Kopka, J.; Fevereiro, P.; Kragler, F.; Pina, A.: The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 11 (6), 349 (2021)
194.
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Thirumalaikumar, V. P.; Wagner, M.; Balazadeh, S.; Skirycz, A.: Autophagy is responsible for the accumulation of proteogenic dipeptides in response to heat stress in Arabidopsis thaliana. The FEBS Journal 288 (1), S. 281 - 292 (2021)
195.
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Timm, S.; Nunes-Nesi, A.; Florian, A.; Eisenhut, M.; Morgenthal, K.; Wirtz, M.; Hell, R.; Weckwerth, W.; Hagemann, M.; Fernie, A. R. et al.; Bauwe, H.: Metabolite Profiling in Arabidopsisthaliana with Moderately Impaired Photorespiration Reveals Novel Metabolic Links and Compensatory Mechanisms of Photorespiration. Metabolites 11 (6), 391 (2021)
196.
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Tiozon, R.J.N.; Fernie, A. R.; Sreenivasulu, N.: Meeting human dietary vitamin requirements in the staple rice via strategies of biofortification and post-harvest fortification. Trends in Food Science and Technology 109, S. 65 - 82 (2021)
197.
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Tomaštíková, E. D.; Hafrén, A.; Trejo-Arellano, M. S.; Rasmussen, S. R.; Sato, H.; Santos-González, J.; Köhler, C.; Hennig, L.; Hofius, D.: Polycomb Repressive Complex 2 and KRYPTONITE regulate pathogen-induced programmed cell death in Arabidopsis. Plant Physiology 185 (4), S. 2003 - 2021 (2021)
198.
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Tong, H.; Küken, A.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 78, S. 5123 - 5138 (2021)
199.
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Tong, H.; Nikoloski, Z.: Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. Journal of Plant Physiology 257, 153354 (2021)
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Uflewski, M.; Mielke, S.; Correa Galvis, V.; von Bismarck, T.; Chen, X.; Tietz, E.; Ruß, J.; Luzarowski, M.; Sokolowska, E.; Skirycz, A. et al.; Eirich, J.; Finkemeier, I.; Schöttler, M. A.; Armbruster, U.: Functional characterization of proton antiport regulation in the thylakoid membrane. Plant Physiology (2021)
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