Zeitschriftenartikel (165)

51.
Zeitschriftenartikel
Bolger, A. M.; Lohse, M.; Usadel, B.: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (15), S. 2114 - 2120 (2014)
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52.
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Bolger, M. E.; Weisshaar, B.; Scholz, U.; Stein, N.; Usadel, B.; Mayer, K. F.: Plant genome sequencing — applications for crop improvement. Current Opinion in Biotechnology 26, S. 31 - 37 (2014)
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53.
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Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Pieszek, R.; Sherwood, C. C. et al.; Hof, P. R.; Ely, J. J.; Steinhauser, D.; Willmitzer, L.; Bangsbo, J.; Hansson, O.; Call, J.; Giavalisco, P.; Khaitovich, P.: Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness. PLoS Biology 12 (5), e1001871 (2014)
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54.
Zeitschriftenartikel
Breuer, D.; Ivakov, A.; Sampathkumar, A.; Hollandt, F.; Persson, S.; Nikoloski, Z.: Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11 (97), 20140362 (2014)
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55.
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Breuer, D.; Nikoloski, Z.: img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30 (22), S. 3291 - 2 (2014)
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56.
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Breuer, D.; Timme, M.; Memmesheimer, R.-M.: Statistical Physics of Neural Systems with Nonadditive Dendritic Coupling. Physical Review X 4 (1), 011053 (2014)
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57.
Zeitschriftenartikel
Cavalcanti, J. H. F.; Esteves-Ferreira, A. A.; Quinhones, C. G. S.; Pereira-Lima, I. A.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Evolution and functional implications of the tricarboxylic acid cycle as revealed by phylogenetic analysis. Genome biology and evolution 6 (10), S. 2830 - 48 (2014)
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58.
Zeitschriftenartikel
Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martín-Pizarro, C.; Laitinen, R.; Rowan, B.; Tenenboim, H. et al.; Lechner, S.; Demar, M.; Habring-Müller, A.; Lanz, C.; Rätsch, G.; Weigel, D.: Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 159 (6), S. 1341 - 1351 (2014)
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59.
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Chen, S.; Wu, S.; Li, W.; Chen, X.; Dong, X.; Tan, G.; Zhang, H.; Hong, Z.; Zhu, Z.; Chai, Y.: Investigation of the therapeutic effectiveness of active components in Sini decoction by a comprehensive GC/LC-MS based metabolomics and network pharmacology approaches. Molecular BioSystems 10 (12), S. 3310 - 3321 (2014)
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60.
Zeitschriftenartikel
Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America 111 (39), S. E4127 - E4136 (2014)
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61.
Zeitschriftenartikel
Dang, N. X. D.; Popova, A. V.; Hundertmark, M.; Hincha, D. K.: Functional characterization of selected LEA proteins from Arabidopsis thaliana in yeast and in vitro. Planta 240, S. 325 - 336 (2014)
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62.
Zeitschriftenartikel
Dasgupta, K.; Khadilkar, A.S.; Sulpice, R.; Pant, B.; Scheible, W.-R.; Fisahn, J.; Stitt, M.; Ayre, B.G.: Expression of sucrose transporter cDNAs specifically in companion cells enhances phloem loading and long-distance transport of sucrose but leads to an inhibition of growth and the perception of a phosphate limitation. Plant Physiology 165 (2), S. 715 - 731 (2014)
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63.
Zeitschriftenartikel
Delgado, R.; Munoz, Y.; Pena-Cortes, H.; Giavalisco, P.; Bacigalupo, J.: Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. The Journal of Neuroscience 34 (19), S. 6679 - 6686 (2014)
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64.
Zeitschriftenartikel
Devanathan, S.; Erban, A.; Perez-Torres Jr., R.; Kopka, J.; Makaroff, C. A.: Arabidopsis thaliana Glyoxalase 2-1 Is Required during Abiotic Stress but Is Not Essential under Normal Plant Growth. PLOS ONE 9 (4), e95971 (2014)
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65.
Zeitschriftenartikel
Eckert, C.; Offenborn, J. N.; Heinz, T.; Armarego-Marriott, T.; Schültke, S.; Zhang, C.; Hillmer, S.; Heilmann, M.; Schumacher, K.; Bock, R. et al.; Heilmann, I.; Kudla, J.: The vacuolar calcium sensors CBL2 and CBL3 affect seed size and embryonic development in Arabidopsis thaliana. The Plant Journal 78 (1), S. 146 - 156 (2014)
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66.
Zeitschriftenartikel
Ehrnthaler, M.; Scharff, L. B.; Fleischmann, T. T.; Hasse, C.; Ruf, S.; Bock, R.: Synthetic Lethality in the Tobacco Plastid Ribosome and Its Rescue at Elevated Growth Temperatures. The Plant Cell 26 (2), S. 765 - 776 (2014)
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67.
Zeitschriftenartikel
Fernandez-Calvino, L.; Osorio, S.; Hernandez, M. L.; Hamada, I. B.; Del Toro, F. J.; Donaire, L.; Yu, A.; Bustos, R.; Fernie, A. R.; Martinez-Rivas, J. M. et al.; Llave, C.: Virus-Induced Alterations in Primary Metabolism Modulate Susceptibility to Tobacco rattle virus in Arabidopsis. Plant Physiology 166 (4), S. 1821 - 38 (2014)
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68.
Zeitschriftenartikel
Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), S. 893 - 911 (2014)
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69.
Zeitschriftenartikel
Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), S. 941 - 959 (2014)
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70.
Zeitschriftenartikel
Fristed, R.; Scharff, L. B.; Clarke, C.; Wang, Q.; Lin, C.; Merchant, S.; Bock, R.: RBF1, a Plant Homolog of the Bacterial Ribosome-Binding Factor RbfA, Acts in Processing of the Chloroplast 16S Ribosomal RNA. Plant Physiology 164 (1), S. 201 - 215 (2014)
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71.
Zeitschriftenartikel
Fuentes, I.; Stegemann, S.; Golczyk, H.; Karcher, D.; Bock, R.: Horizontal genome transfer as an asexual path to the formation of new species. Nature 511 (7508), S. 232 - 235 (2014)
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72.
Zeitschriftenartikel
Fujikura, U.; Elsaesser, L.; Breuninger, H.; Sanchez-Rodriguez, C.; Ivakov, A.; Laux, T.; Findlay, K.; Persson, S.; Lenhard, M.: Atkinesin-13A Modulates Cell-Wall Synthesis and Cell Expansion in Arabidopsis thaliana via the THESEUS1 Pathway. PLoS Genetics 10 (9), e1004627 (2014)
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73.
Zeitschriftenartikel
Gadeyne, A.; Sanchez-Rodriguez, C.; Vanneste, S.; Di Rubbo, S.; Zauber, H.; Vanneste, K.; Van Leene, J.; De Winne, N.; Eeckhout, D.; Persiau, G. et al.; De Slijke, E. V.; Cannoot, B.; Vercruysse, L.; Mayers, J. R.; Adamowski, M.; Kania, U.; Ehrlich, M.; Schweighofer, A.; Ketelaar, T.; Maere, S.; Bednarek, S. Y.; Friml, J.; Gevaert, K.; Witters, E.; Russinova, E.; Persson, S.; De Jaeger, G.; Van Damme, D.: The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants. Cell 156 (4), S. 691 - 704 (2014)
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74.
Zeitschriftenartikel
Gago, J.; Douthe, C.; Florez-Sarasa, I. D.; Escalona, J. M.; Galmes, J.; Fernie, A. R.; Flexas, J.; Medrano, H.: Opportunities for improving leaf water use efficiency under climate change conditions. Plant Science 226, S. 108 - 119 (2014)
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75.
Zeitschriftenartikel
Gallep, C. M.; Moraes, T. A.; Cervinkova, K.; Cifra, M.; Katsumata, M.; Barlow, P. W.: Lunisolar tidal synchronism with biophoton emission during intercontinental wheat-seedling germination tests. Plant Signaling & Behavior 9 (3), S. e28671 - e28671 (2014)
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76.
Zeitschriftenartikel
Gao, J.; van Kleeff, P. J. M.; Oecking, C.; Li, K. W.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A. H.: Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins. The Plant Journal 80 (5), S. 785 - 796 (2014)
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77.
Zeitschriftenartikel
Giuntoli, B.; Lee, S. C.; Licausi, F.; Kosmacz, M.; Oosumi, T.; van Dongen, J. T.; Bailey-Serres, J.; Perata, P.: A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis. PLoS Biology 12 (9), e1001950 (2014)
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78.
Zeitschriftenartikel
Glaubitz, U.; Li, X.; Koehl, K. I.; van Dongen, J. T.; Hincha, D. K.; Zuther, E.: Differential physiological responses of different rice (Oryza sativa) cultivars to elevated night temperature during vegetative growth. Functional Plant Biology 41 (4), S. 437 - 448 (2014)
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79.
Zeitschriftenartikel
Golczyk, H.; Greiner, S.; Wanner, G.; Weihe, A.; Bock, R.; Börner, T.; Herrmann, R. G.: Chloroplast DNA in mature and senescing leaves - a reappraisal. The Plant Cell 26 (3), S. 847 - 854 (2014)
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80.
Zeitschriftenartikel
Golczyk, H.; Massouh, A.; Greiner, S.: Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses. The Plant Cell 26 (3), S. 1280 - 1293 (2014)
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81.
Zeitschriftenartikel
Guo, K.-T.; Fu, P.; Juerchott, K.; Motaln, H.; Selbig, J.; Lah, T.; Tonn, J.-C.; Schichor, C.: The expression of Wnt-inhibitor DKK1 (Dickkopf 1) is determined by intercellular crosstalk and hypoxia in human malignant gliomas. Journal of Cancer Research and Clinical Oncology 140 (8), S. 1261 - 1270 (2014)
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82.
Zeitschriftenartikel
Guo, K.; Zou, W.; Feng, Y.; Zhang, M.; Zhang, J.; Tu, F.; Xie, G.; Wang, L.; Wang, Y.; Klie, S. et al.; Persson, S.; Peng, L.: An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics 15, 596 (2014)
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83.
Zeitschriftenartikel
Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), S. 1803 - 1824 (2014)
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84.
Zeitschriftenartikel
Hemme, D.; Veyel, D.; Mühlhaus, T.; Sommer, F.; Jueppner, J.; Unger, A.-K.; Sandmann, M.; Fehrle, I.; Schönfelder, S.; Steup, M. et al.; Geimer, S.; Kopka, J.; Giavalisco, P.; Schroda, M.: Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (11), S. 4270 - 4297 (2014)
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85.
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Henry, C.; Bledsoe, S. W.; Siekman, A.; Kollman, A.; Waters, B. M.; Feil, R.; Stitt, M.; Lagrimini, L. M.: The trehalose pathway in maize: conservation and gene regulation in response to the diurnal cycle and extended darkness. Journal of Experimental Botany 65 (20), S. 5959 - 5973 (2014)
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86.
Zeitschriftenartikel
Hofferek, V.; Mendrinna, A.; Gaude, N.; Krajinski, F.; Devers, E. A.: MiR171h restricts root symbioses and shows like its target NSP2 a complex transcriptional regulation in Medicago truncatula. BMC Plant Biology 14, 199 (2014)
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87.
Zeitschriftenartikel
Hojka, M.; Thiele, W.; Toth, S. Z.; Lein, W.; Bock, R.; Schöttler, M. A.: Inducible Repression of Nuclear-Encoded Subunits of the Cytochrome b(6)f Complex in Tobacco Reveals an Extraordinarily Long Lifetime of the Complex. Plant Physiology 165 (4), S. 1632 - 1646 (2014)
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88.
Zeitschriftenartikel
Hooks, M. A.; Allwood, J. W.; Harrison, J. K. D.; Kopka, J.; Erban, A.; Goodacre, R.; Balk, J.: Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis. Biochemical Journal 463, S. 309 - 317 (2014)
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89.
Zeitschriftenartikel
Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, 5067 (2014)
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90.
Zeitschriftenartikel
Idoine, A.; Boulouis, A.; Rupprecht, J.; Bock, R.: The Diurnal Logic of the Expression of the Chloroplast Genome in Chlamydomonas reinhardtii. PLoS One 9 (10), e108760 (2014)
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91.
Zeitschriftenartikel
Ito, J.; Herter, T.; Baidoo, E. E.; Lao, J.; Vega-Sánchez, M. E.; Smith-Moritz, M. A.; Adams, P. D.; Keasling, J. D.; Usadel, B.; Petzold, C. J. et al.; Heazlewood, J. L.: Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Analytical Biochemistry 448, S. 14 - 22 (2014)
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92.
Zeitschriftenartikel
Jarsch, I. K.; Konrad, S. S. A.; Stratil, T. F.; Urbanus, S. L.; Szymanski, W. G.; Braun, P.; Braun, K.-H.; Ott, T.: Plasma Membranes Are Subcompartmentalized into a Plethora of Coexisting and Diverse Microdomains in Arabidopsis and Nicotiana benthamiana. The Plant Cell 26 (4), S. 1698 - 1711 (2014)
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93.
Zeitschriftenartikel
Jinich, A.; Rappoport, D.; Dunn, I.; Sanchez-Lengeling, B.; Olivares-Amaya, R.; Noor, E.; Bar-Even, A.; Aspuru-Guzik, A.: Quantum Chemical Approach to Estimating the Thermodynamics of Metabolic Reactions. Scientific Reports 4, 7022 (2014)
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94.
Zeitschriftenartikel
Kapuganti, J. G.; Brotman, Y.; Mur, L. A. J.: Localisation and Quantification of Reactive Oxygen Species and Nitric Oxide in Arabidopsis Roots in Response to Fungal Infection. Bio-protocol 4 (19), e1259 (2014)
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95.
Zeitschriftenartikel
Kleessen, S.; Klie, S.; Nikoloski, Z.: Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9 (8), e103637 (2014)
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96.
Zeitschriftenartikel
Klein, O.; Strohschein, K.; Nebrich, G.; Oetjen, J.; Trede, D.; Thiele, H.; Alexandrov, T.; Giavalisco, P.; Duda, G. N.; von Roth, P. et al.; Geissler, S.; Klose, J.; Winkler, T.: MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures. Proteomics 14 (20), S. 2249 - 2260 (2014)
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97.
Zeitschriftenartikel
Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21 (6), S. 428 - 445 (2014)
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98.
Zeitschriftenartikel
Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), S. 55 - 68 (2014)
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99.
Zeitschriftenartikel
Koenig, A. G.; Hartl, M.; Pham, P. A.; Laxa, M.; Boersema, P.; Orwat, A.; Kalitventseva, I.; Ploechinger, M.; Braun, H. P.; Leister, D. et al.; Mann , M.; Wachter, A.; Fernie, A. R.; Finkemeier, I.: The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiology 164, S. 1406 - 1412 (2014)
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100.
Zeitschriftenartikel
Korkuc, P.; Schippers, J. H. M.; Walther, D.: Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 164 (1), S. 181 - 200 (2014)
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