Publikationen von B. Usadel

Tohge, T., Scossa, F., Wendenburg, R., Frasse, P., Balbo, I., Watanabe, M., Alseekh, S., Jadha, S. S., Delfin, J. C., Lohse, M., Giavalisco, P., Usadel, B., Zhang, Y. J., Luo, J., Bouzayen, M. & Fernie, A. R. Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13, 1027–1046 (2020).

Cookson, S. J., Yadav, U. P., Klie, S., Morcuende, R., Usadel, B., Lunn, J. E. & Stitt, M. Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39, 768–786 (2016).

Bolger, A. M., Scossa, F., Bolger, A. M., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S. A., Schijlen, E., Jimenez-Gomez, J. M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L. R., Maloof, J. N., Sinha, N., van Ham, R. C. H. J., Lankhorst, R. K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J. K. C., Zamir, D., Carrari, F. F., Giovannoni, J. J., Weigel, D., Usadel, B. & Fernie, A. R. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46, 1034–1038 (2014).

Bolger, M. E., Weisshaar, B., Scholz, U., Stein, N., Usadel, B. & Mayer, K. F. X. Plant genome sequencing — applications for crop improvement. Current Opinion in Biotechnology 26, 31–37 (2014).

Ito, J., Herter, T., Baidoo, E. E., Lao, J., Vega-Sánchez, M. E., Smith-Moritz, M. A., Adams, P. D., Keasling, J. D., Usadel, B., Petzold, C. J. & Heazlewood, J. L. Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Analytical Biochemistry 448, 14–22 (2014).

Ramšak, Ž., Baebler, Š., Rotter, A., Korbar, M., Mozetič, I., Usadel, B. & Gruden, K. GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Research 42, D1167–D1175 (2014).

Lee, Y. P., Giorgi, F. M., Lohse, M., Kvederaviciute, K., Klages, S., Usadel, B., Meskiene, I., Reinhardt, R. & Hincha, D. K. Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). BMC Genomics 14, 793–793 (2013).

Li, J.-W., Bolser, D., Manske, M., Giorgi, F., Vyahhi, N., Usadel, B., Clavijo, B. J., Chan, T.-F., Wong, N., Zerbino, D. & Schneider, M. V. The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings in Bioinformatics 14, 548–555 (2013).

Matsuba, Y., Nguyen, T. T. H., Wiegert, K., Falar, V., Gonzales-Vigil, E., Leong, B., Schaefer, P., Kudrna, D., Wing, R. A., Bolger, A. M., Usadel, B., Tissier, A., Fernie, A. R., Barry, C. S. & Pichersky, E. Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 25, 2022–2036 (2013).

Fernie, A. R. & Usadel, B. The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, 48 (2013).

Koenig, D., Jimenez-Gomez, J. M., Kimura, S., Fulop, D., Chitwood, D. H., Headland, L. R., Kumar, R., Covington, M. F., Devisetty, U. K., Tat, A. V., Tohge, T., Bolger, A. M., Schneeberger, K., Ossowski, S., Lanz, C., Xiong, G., Taylor-Teeples, M., Brady, S. M., Pauly, M., Weigel, D., Usadel, B., Fernie, A. R., Peng, J., Sinha, N. R. & Maloof, J. N. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110, E2655–E2662 (2013).

Müller, K., Levesque-Tremblay, G., Bartels, S., Weitbrecht, K., Wormit, A., Usadel, B., Haughn, G. & Kermode, A. R. Demethylesterification of Cell Wall Pectins in Arabidopsis Plays a Role in Seed Germination1[W][OA]. Plant Physiology 161, 305–316 (2013).

Muller, K., Levesque-Tremblay, G., Fernandes, A., Wormit, A., Bartels, S., Usadel, B. & Kermode, A. Overexpression of a pectin methylesterase inhibitor in Arabidopsis thaliana leads to altered growth morphology of the stem and defective organ separation. Plant Signaling & Behavior 8, (2013).

Pal, S. K., Liput, M., Piques, M., Ishihara, H., Obata, T., Martins, M. C., Sulpice, R., van Dongen, J. T., Fernie, A. R., Yadav, U. P., Lunn, J. E., Usadel, B. & Stitt, M. Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. Plant Physiology 162, 1246–1265 (2013).

Usadel, B., Schwacke, R., Nagel, A. & Kersten, B. GabiPD – The GABI Primary Database integrates plant proteomic data with gene-centric information. Frontiers in Plant Science 3, (2012).

Araujo, W. L., Tohge, T., Osorio, S., Lohse, M., Balbo, I., Krahnert, I., Sienkiewicz-Porzucek, A., Usadel, B., Nunes-Nesi, A. & Fernie, A. R. Antisense Inhibition of the 2-Oxoglutarate Dehydrogenase Complex in Tomato Demonstrates Its Importance for Plant Respiration and during Leaf Senescence and Fruit Maturation. The Plant Cell 24, 2328–2351 (2012).

Gouws, L. M., Botes, E., Wiese, A. J., Trenkamp, S., Torres-Jerez, I., Tang, Y., Hills, P. N., Usadel, B., Lloyd, J. R., Fernie, A. R., Kossmann, J. & van der Merwe, M. J. The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots. Frontiers in Plant Science 3, 120 (2012).

Li, J. W., Robison, K., Martin, M., Sjodin, A., Usadel, B., Young, M., Olivares, E. C. & Bolser, D. M. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Research 40, D1313–D1317 (2012).

Lohse, M., Bolger, A. M., Nagel, A., Fernie, A. R., Lunn, J. E., Stitt, M. & Usadel, B. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research 40, W622–W627 (2012).

Neumetzler, L., Humphrey, T., Lumba, S., Snyder, S., Yeats, T. H., Usadel, B., Vasilevski, A., Patel, J., Rose, J. K. C., Persson, S. & Bonetta, D. The FRIABLE1 Gene Product Affects Cell Adhesion in Arabidopsis. PLoS One 7, e42914 (2012).