Publikationen von Sebastian Proost

Borghi, M., de Souza, L. P., Tohge, T., Mi, J. N., Melandri, G., Proost, S., Martins, M. C. M., Al-Babili, S., Bouwmeester, H. J. & Fernie, A. R. High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology 190, 319–339 (2022).

David, Z., Swart, C., Graf, A., Arrivault, S., Tillich, M., Proost, S., Nikoloski, Z., Stitt, M., Bock, R., Mühlhaus, M. & Boulouis, A. Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7, (2021).

Julca, I., Ferrari, C., Flores-Tornero, M., Proost, S., Lindner, A.-C., Hackenberg, D., Steinbachová, L., Michaelidis, C., Gomes Pereira, S., Misra, C. S., Kawashima, T., Borg, M., Berger, F., Goldberg, J., Johnson, M., Honys, D., Twell, D., Sprunck, S., Dresselhaus, T., Becker, J. D. & Mutwil, M. Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, 1143–1159 (2021).

Sujeeth, N., Mehterov, N., Gupta, S., Qureshi, M. K., Fischer, A., Proost, S., Omidbakhshfard, M. A., Obata, T., Benina, M., Staykov, N., Balazadeh, S., Walther, D., Fernie, A. R., Mueller-Roeber, B., Hille, J. & Gechev, T. S. A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, 705–718 (2020).

de Souza, L. P., Scossa, F., Proost, S., Bitocchi, E., Papa, R., Tohge, T. & Fernie, A. R. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97, 1132–1153 (2019).

Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A. R., Stitt, M. & Mutwil, M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, (2019).

Flores-Tornero, M., Proost, S., Mutwil, M., Scutt, C. P., Dresselhaus, T. & Sprunck, S. Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells. Plant Reproduction 32, 15–27 (2019).

Rosado-Souza, L., Proost, S., Moulin, M., Bergmann, S., Bocobza, S. E., Aharoni, A., Fitzpatrick, T. B., Mutwil, M., Fernie, A. R. & Obata, T. Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod. Plant Physiology 180, 185–197 (2019).

Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).

Ferrari, C., Proost, S., Ruprecht, C. & Mutwil, M. PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research 46, W76–W83 (2018).

Proost, S. & Mutwil, M. CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. Nucleic Acids Research 46, W133–W140 (2018).

Proost, S., Krawczyk, A. & Mutwil, M. LSTrAP: efficiently combining RNA sequencing data into co-expression networks. BMC Bioinformatics 18, (2017).

Ruprecht, C., Proost, S., Hernandez-Coronado, M., Ortiz-Ramirez, C., Lang, D., Rensing, S. A., Becker, J. D., Vandepoele, K. & Mutwil, M. Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90, 447–465 (2017).

Ruprecht, C., Vaid, N., Proost, S., Persson, S. & Mutwil, M. Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22, 298–307 (2017).

Sibout, R., Proost, S., Hansen, B. O., Vaid, N., Giorgi, F. M., Ho-Yue-Kuang, S., Legee, F., Cezart, L., Bouchabke-Coussa, O., Soulhat, C., Provart, N., Pasha, A., Le Bris, P., Roujol, D., Hofte, H., Jamet, E., Lapierre, C., Persson, S. & Mutwil, M. Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytologist 215, 1009–1025 (2017).

Swiadek, M., Proost, S., Sieh, D., Yu, J., Todesco, M., Jorzig, C., Cubillos, A., Plötner, B., Nikoloski, Z., Chae, E., Giavalisco, P., Fischer, A., Schröder, F., Kim, S.-T., Weigel, D. & Laitinen, R. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213, 900–915 (2017).

Proost, S. & Mutwil, M. Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology 30, 143–150 (2016).

Omidbakhshfard, M. A., Proost, S., Fujikura, U. & Mueller-Roeber, B. Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Molecular Plant 8, 998–1010 (2015).

Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inze, D., Mueller-Roeber, B. & Vandepoele, K. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Research 43, D974–D981 (2015).

Balazadeh, S., Schildhauer, J., Araujo, W. L., Munne-Bosch, S., Fernie, A. R., Proost, S., Humbeck, K. & Mueller-Roeber, B. Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65, 3975–3992 (2014).