Huege, J.; Goetze, J.; Dethloff, F.; Junker, B.; Kopka, J.: Quantification of stable isotope label in metabolites via mass spectrometry. In: Methods in Molecular Biology, Bd. 1056, S. 213 - 223. Humana Press Inc., Totowa, NJ, USA (2012)

Hummel, J.; Strehmel, N.; Boelling, C.; Schmidt, S.; Walther, D.; Kopka, J.: Mass spectral search and analysis using the Golm Metabolome Database. In: The Handbook of Plant Metabolomics, S. 321 - 343 (Hg. Weckwerth, W.) (2012)

Lüdemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder: Preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry based metabolome analyses. In: Methods in Molecular Biology, Bd. 860, S. 255 - 286 (Hg. Hardy, N. W.; Hall, R. D.). Springer, Berlin (2012)

Luedemann, A.; von Malotky, L.; Erban, A.; Kopka, J.: TagFinder-preprocessing software for the fingerprinting and the profiling of gas chromatography-mass spectrometry (GC-MS) based metabolome analyses. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Aufl., S. 255 - 286 (Hg. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)

Schudoma, C.; Steinfath, M.; Sprenger, H.; van Dongen, J.; Hincha, D. K.; Zuther, E.; Geigenberger, P.; Kopka, J.; Koehl, K. I.; Walther, D.: Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Hg. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)

Allwood, J. W.; De Vos, R. C.H.; Moing, A.; Deborde, C.; Erban, A.; Kopka, J.; Goodacre, R.; Hall, R. D.: Plant metabolomics and its potential for systems biology research: background concepts, technology and methodology. In: Methods in Enzymology, Bd. 500, S. 299 - 336 (Hg. Jameson, D.; Verma, M.; Westerhoff, H.V.). Elsevier - Academic Press, Amsterdam, NED (2011)

Kopka, J.; Walther, D.; Allwood, J. W.; Goodacre, R.: Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Aufl., S. 317 - 342 (Hg. Hall, R. D.). Blackwell-Wiley, London, UK (2011)

Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, S. 19 - 38 (Hg. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)

Hummel, J.; Selbig, J.; Walther, D.; Kopka, J.: The Golm Metabolome Database: a database for GC-MS based metabolite profiling. In: Metabolomics: A Powerful Tool in Systems Biology, S. 75 - 95 (Hg. Nielsen, J.; Jewett, M.). Springer-Verlag, Berlin, Heidelberg, New York (2007)

Steinhauser, D.; Kopka, J.: Methods, applications and concepts of metabolite profiling: primary metabolism. In: Plant Systems Biology, S. 171 - 194 (Hg. Baginsky, S.; Fernie, A. R.). Verlag Birkhäuser, Basel, SUI (2007)

Zuther, E.; Koehl, K. I.; Kopka, J.: Comparative metabolome analysis of the salt response in breeding cultivars of rice. In: Advances in molecular breeding toward drought and salt tolerant crops., S. 285 - 315 (Hg. Jenks, M. A.; Hasegawa, P. M.; Jain, S. M.). Springer-Verlag, Berlin, Heidelberg, New York (2007)

Kopka, J.: Metabolomics: Comprehensive analysis of metabolism. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Hg. Ganten, D.; Ruckpaul, K.). Springer-Verlag, Berlin, Heidelberg (2006)

Kopka, J.: Gas chromatography mass spectrometry. In: Biotechnology in Agriculture and Forestry, S. 3 - 20 (Hg. Nagata, T.; Lörz, H.; Widholm, J. M.; Dixon, R. A.; Willmitzer, L.). Springer-Verlag, Berlin, Heidelberg, New York (2006)

Udvardi, M. K.; Ott, T.; Krusell, L.; Desbrosses, G.; Voroshilova, V.; Colebatch, G.; Wandrey, M.; Montanari, O.; Kakar, K.; Krause, K. et al.; Guenther, C.; van Dongen, J. T.; Vigeolas, H.; Geigenberger, P.; Kraemer, U.; Kloska, S.; Kopka, J.; Sato, S.; Nakamura, Y.; Tabata, S.; James, E. K.; Kawaguchi, M.; Miyamoto, A.; Suganuma, N.; Sandal, N.; Stougaard, J.: Insights into nodule physiology and metabolism from transcriptomics, metabolomics, bioinformatics, and genetics. In: Biology of plant-microbe interactions, Bd. 5, S. 96 - 102 (Hg. Sánchez, F.; Quinto, C.; López-Lara, I. M.; Geiger, O.). ISMPMI, St. Paul, MN, USA (2006)

Desbrosses, G.; Steinhauser, D.; Kopka, J.; Udvardi, M. K.: Lotus metabolome analysis using GC-MS. In: Lotus japonicus handbook, S. 165 - 174 (Hg. Marquez, A. J.; Stougaard, J.; Udvardi, M.; Parniske, M.; Spaink, H. P. et al.). Kluwer, Dordrecht (2005)

Metabolic, Transcriptional and Proteomic Profiling of Cold Response in Fragaria vesca. 6th International Strawberry Symposium, Huelva, SPAIN, 2009-08. (2009)

Glaubitz, U.; Erban, A.; Kopka, J.; Hincha, D. K.; Zuther, E.: Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress. In: Agriculture and Climate Change - Adapting Crops to increased uncertainty (Agri 2015), S. 72 - 72. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, 13. Juli 2015 - 15. Juli 2015. (2015)

Zuther, E.; Li, X.; Lawas, L. M. F.; Malo, R.; Glaubitz, U.; Erban, A.; Mauleon, R.; Heuer, S.; Kopka, J.; Hincha, D. K. et al.; Jagadish, K. S. V.: Sugar Starvation of Rice Anthers is a Factor in Reproductive Failure under Heat and Drought Stress, as shown by Metabolite and Transcript Profiling. In: Agriculture and Climate Change - Adapting Crops to Increased Uncertainty (Agri 2015), S. 70 - 71. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, 13. Juli 2015 - 15. Juli 2015. (2015)

Fuehrs, H.; Kopka, J.; Braun, H. P.; Horst, W. J.: Metabolomic and Proteomic Analysis of Manganese Sensitivity and Tolerance in the Tropical Legume Cowpea (Vigna unguiculata L.). In: XVI. International Plant Nutrition Colloquium (Hg. Luoma, S. N.). XVI. International Plant Nutrition Colloquium, Sacramento, CA, USA. (2009)

Kaplan, F.; Sung, D. Y.; Haskell, D.; Riad, G. S.; Popp, M.; Amaya, M.; LaBoon, A.; Kawamura, Y.; Tominaga, Y.; Kopka, J. et al.; Uemura, M.; Lee, K. -.; Brecht, J. K.; Guy, C. L.: Could Ethanolic Fermentation During Cold Shock Be a Novel Plant Cold Stress Coping Strategy? In: PLANT COLD HARDINESS: FROM THE LABORATORY TO THE FIELD, S. 80 - 90. 8th International Plant Cold Hardiness Seminar (8IPCHS), Saskatchewan, CANADA, 03. August 2007 - 09. August 2007. CABI PUBLISHING-C A B INT., Ocon, England (2009)