Steinhauser, D.; Kopka, J.: Methods, applications and concepts of metabolite profiling: primary metabolism. In: Plant Systems Biology, S. 171 - 194 (Hg. Baginsky, S.; Fernie, A. R.). Verlag Birkhäuser, Basel, SUI (2007)

Zuther, E.; Koehl, K. I.; Kopka, J.: Comparative metabolome analysis of the salt response in breeding cultivars of rice. In: Advances in molecular breeding toward drought and salt tolerant crops., S. 285 - 315 (Hg. Jenks, M. A.; Hasegawa, P. M.; Jain, S. M.). Springer-Verlag, Berlin, Heidelberg, New York (2007)

Kopka, J.: Metabolomics: Comprehensive analysis of metabolism. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Hg. Ganten, D.; Ruckpaul, K.). Springer-Verlag, Berlin, Heidelberg (2006)

Kopka, J.: Gas chromatography mass spectrometry. In: Biotechnology in Agriculture and Forestry, S. 3 - 20 (Hg. Nagata, T.; Lörz, H.; Widholm, J. M.; Dixon, R. A.; Willmitzer, L.). Springer-Verlag, Berlin, Heidelberg, New York (2006)

Udvardi, M. K.; Ott, T.; Krusell, L.; Desbrosses, G.; Voroshilova, V.; Colebatch, G.; Wandrey, M.; Montanari, O.; Kakar, K.; Krause, K. et al.; Guenther, C.; van Dongen, J. T.; Vigeolas, H.; Geigenberger, P.; Kraemer, U.; Kloska, S.; Kopka, J.; Sato, S.; Nakamura, Y.; Tabata, S.; James, E. K.; Kawaguchi, M.; Miyamoto, A.; Suganuma, N.; Sandal, N.; Stougaard, J.: Insights into nodule physiology and metabolism from transcriptomics, metabolomics, bioinformatics, and genetics. In: Biology of plant-microbe interactions, Bd. 5, S. 96 - 102 (Hg. Sánchez, F.; Quinto, C.; López-Lara, I. M.; Geiger, O.). ISMPMI, St. Paul, MN, USA (2006)

Desbrosses, G.; Steinhauser, D.; Kopka, J.; Udvardi, M. K.: Lotus metabolome analysis using GC-MS. In: Lotus japonicus handbook, S. 165 - 174 (Hg. Marquez, A. J.; Stougaard, J.; Udvardi, M.; Parniske, M.; Spaink, H. P. et al.). Kluwer, Dordrecht (2005)

Metabolic, Transcriptional and Proteomic Profiling of Cold Response in Fragaria vesca. 6th International Strawberry Symposium, Huelva, SPAIN, 2009-08. (2009)

Glaubitz, U.; Erban, A.; Kopka, J.; Hincha, D. K.; Zuther, E.: Metabolite Profiling Reveals Sensitivity-Dependent Metabolic Shifts in Rice (Oryza Sativa L.) Cultivars under High Night Temperature Stress. In: Agriculture and Climate Change - Adapting Crops to increased uncertainty (Agri 2015), S. 72 - 72. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, 13. Juli 2015 - 15. Juli 2015. (2015)

Zuther, E.; Li, X.; Lawas, L. M. F.; Malo, R.; Glaubitz, U.; Erban, A.; Mauleon, R.; Heuer, S.; Kopka, J.; Hincha, D. K. et al.; Jagadish, K. S. V.: Sugar Starvation of Rice Anthers is a Factor in Reproductive Failure under Heat and Drought Stress, as shown by Metabolite and Transcript Profiling. In: Agriculture and Climate Change - Adapting Crops to Increased Uncertainty (Agri 2015), S. 70 - 71. 4th International Conference on Agriculture and Horticulture (AGRI), Beijing, PEOPLES R CHINA, 13. Juli 2015 - 15. Juli 2015. (2015)

Fuehrs, H.; Kopka, J.; Braun, H. P.; Horst, W. J.: Metabolomic and Proteomic Analysis of Manganese Sensitivity and Tolerance in the Tropical Legume Cowpea (Vigna unguiculata L.). In: XVI. International Plant Nutrition Colloquium (Hg. Luoma, S. N.). XVI. International Plant Nutrition Colloquium, Sacramento, CA, USA. (2009)

Kaplan, F.; Sung, D. Y.; Haskell, D.; Riad, G. S.; Popp, M.; Amaya, M.; LaBoon, A.; Kawamura, Y.; Tominaga, Y.; Kopka, J. et al.; Uemura, M.; Lee, K. -.; Brecht, J. K.; Guy, C. L.: Could Ethanolic Fermentation During Cold Shock Be a Novel Plant Cold Stress Coping Strategy? In: PLANT COLD HARDINESS: FROM THE LABORATORY TO THE FIELD, S. 80 - 90. 8th International Plant Cold Hardiness Seminar (8IPCHS), Saskatchewan, CANADA, 03. August 2007 - 09. August 2007. CABI PUBLISHING-C A B INT., Ocon, England (2009)

Birkemeye, C.; Kopka, J.: Design of metabolite recovery by variations of the metabolite profiling protocol. In: Concepts in Plant Metabolomics, S. 45 - 69. 3rd International Congress on Plant Metabolomics, Ames, IA. (2007)

Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Bd. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, 26. September 2007 - 28. September 2007. (2007)

Kopka, J.; Steinhauser, D.: Cellular inventory: A joint initiative of the comprehensive systems-biology database [CSB. DB], the Golm Metabolite Database [GMD] and MapMan. (2005)

Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, S. 2477 - 2482 (2011)

Hanson, A. D.; Hibberd, J. M.; Koffas, M. A. G.; Kopka, J.; Wurtzel, E. T.: Focus Issue Editorial: Synthetic Biology. Plant Physiology 179 (3), S. 772 - 774 (2019)

Kopka, J.; Fernie, A. R.: Editorial overview: Plant synthetic and systems biology. Current Opinion in Biotechnology 49, S. viii - xi (2018)

Carroll, A. J.; Salek, R. M.; Arita, M.; Kopka, J.; Walther, D.: Metabolome Informatics and Statistics: Current State and Emerging Trends. Frontiers in Bioengineering and Biotechnology 4, S. 63 - 63 (2016)

Guy, C.; Kopka, J.; Moritz, T.: Plant metabolomics coming of age. Physiologia Plantarum 132 (2), S. 113 - 116 (2008)

Kopka, J.; Fernie, A. R.; Weckwerth, W.; Gibon, Y.; Stitt, M.: Metabolite profiling in plant biology: platforms and destinations. Genome Biology 5 (6), S. 109 (2004)