Publications of the Group

Cheong, B.E.; Beine-Golovchuk, O.; Gorka, M.; Ho, W.W.H.; Martinez-Seidel, F.; Firmino, A.; Skirycz, A.; Roessner, U.; Kopka, J.: Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11 (1), 2410 (2021)

Franzisky, B. L.; Geilfus, C.-M.; Romo-Perez, M. L.; Fehrle, I.; Erban, A.; Kopka, J.; Zorb, C.: Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44 (3), pp. 870 - 884 (2021)

Ginsawaeng, O.; Gorka, M.; Erban, A.; Heise, C.; Brueckner, F.; Hoefgen, R.; Kopka, J.; Skirycz, A.; Hincha, D. K.; Zuther, E.: Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22 (15), 8172 (2021)

Londoño-Giraldo, L.M.; Baena-Pedroza, A.M.; Martinez-Seidel, F.; Corpas-Iguar, E.; Taborda-Ocampo, G.: Gone wild: Integration of antioxidative, physicochemical, volatilomic and sensorial profiles ratify rustic relatives of cherry tomato as ideal mating partners. Scientia Horticulturae 277, 109814 (2021)

Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)

Martinez-Seidel, F.; Beine-Golovchuk, O.; Hsieh, Y.-C.; El Eshraky, K.; Gorka, M.; Cheong, B.-E.; Jimenez‐posada, E.V.; Walther, D.; Skirycz, A.; Roessner, U. et al.; Kopka, J.; Firmino, A.: Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22 (11), 6160 (2021)

Martinez-Seidel, F.; Suwanchaikasem, P.; Nie, S.; Leeming, M.G.; Firmino, A.; Williamson, N.A.; Kopka, J.; Roessner, U.; Boughton, B.A.: Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, 656683 (2021)

Melo, T.O.; Franciscon, L.; Brown, G.; Kopka, J.; Cunha, L.; Martinez-Seidel, F.; Madureira, L.A.D.S.; Hansel, F.A.: Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, 100719 (2021)

Pries, C.; Razaghi-Moghadam, Z.; Kopka, J.; Nikoloski, Z.: Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 11 (1), 4787 (2021)

Samo, N.; Ebert, A.; Kopka, J.; Mozgová, I.: Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, 102002 (2021)

Sangpong, L.; Khaksar, G.; Pinsorn, P.; Oikawa, A.; Sasaki, R.; Erban, A.; Watanabe, M.; Wangpaiboon, K.; Tohge, T.; Kopka, J. et al.; Hoefgen, R.; Saito, K.; Sirikantaramas, S.: Assessing Dynamic Changes of Taste-Related Primary Metabolism During Ripening of Durian Pulp Using Metabolomic and Transcriptomic Analyses. Frontiers in Plant Science 12, 687799 (2021)

Schaarschmidt, S.; Lawas, L.M.F.; Kopka, J.; Jagadish, S. V. K.; Zuther, E.: Physiological and molecular attributes contribute to high night temperature tolerance in cereals. Plant, Cell and Environment 44 (7), pp. 2034 - 2048 (2021)

Scheurer, N.; Rajarathinam, Y.; Timm, S.; Kobler, C.; Kopka, J.; Hagemann, M.; Wilde, A.: Homologs of Circadian Clock Proteins Impact the Metabolic Switch Between Light and Dark Growth in the Cyanobacterium Synechocystis sp. PCC 6803. Frontiers in Plant Science 12, 675227 (2021)

Schillaci, M.; Kehelpannala, C.; Martinez-Seidel, F.; Smith, P. M. C.; Arsova, B.; Watt, M.; Roessner, U.: The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status. Metabolites 11 (6), 358 (2021)

Schumacher, C.; Krannich, C. T.; Maletzki, L.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Seddig, S.; Peters, R.; Hamera, S. et al.; Zuther, E.; Haas, M.; Horn, R.: Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 12 (4), 494 (2021)

Schumacher, C.; Thümecke, S.; Schilling, F.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Walther, D.; Seddig, S.; Peters, R. et al.; Zuther, E.; Haas, M.; Horn, R.: Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.). International Journal of Molecular Sciences 22 (11), 6123 (2021)

Takahashi, D.; Johnson, K.; Hao, P.; Tuong, T.; Erban, A.; Sampathkumar, A.; Bacic, A.; Livingston III, D. P.; Kopka, J.; Kuroha, T. et al.; Yokoyama, R.; Nishitani, K.; Zuther, E.; Hincha, D. K.: Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 44 (3), pp. 915 - 930 (2021)

Tedesco, S.; Erban, A.; Gupta, S.; Kopka, J.; Fevereiro, P.; Kragler, F.; Pina, A.: The Impact of Metabolic Scion–Rootstock Interactions in Different Grapevine Tissues and Phloem Exudates. Metabolites 11 (6), 349 (2021)

Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

Firmino, A.; Pinheiro, D.H.; Moreira-Pinto, C.E.; Antonino, J.D.; Macedo, L.L.P.; Martins-de-Sa, D.; Arraes, F.B.M.; Coelho, R.R.; Fonseca, F.C.D.A.; Silva, M.C.M. et al.; Engler, J.D.A.; Silva, M.S.; Lourenço-Tessutti, I.T.; Terra, W.R.; Grossi-de-Sa, M.F.: RNAi-Mediated Suppression of Laccase2 Impairs Cuticle Tanning and Molting in the Cotton Boll Weevil (Anthonomus grandis). Frontiers in Physiology 11, 591569 (2020)