Parveen, I.; Moorby, J. M.; Fraser, M. D.; Allison, G. G.; Kopka, J.: Application of gas chromatography-mass spectrometry metabolite profiling techniques to the analysis of heathland plant diets of sheep. Journal of Agricultural and Food Chemistry 55 (4), S. 1129 - 1138 (2007)

Schaarschmidt, S.; Kopka, J.; Ludwig-Mueller, J.; Hause, B.: Regulation of arbuscular mycorrhization by apoplastic invertases: enhanced invertase activity in the leaf apoplast affects the symbiotic interaction. Plant Journal 51 (3), S. 390 - 405 (2007)

Sumner, L. W.; Amberg, A.; Barrett, D.; Beale, M. H.; Beger, R.; Daykin, C. A.; Fan, T. W. M.; Fiehn, O.; Goodacre, R.; Griffin, J. L. et al.; Hankemeier, T.; Hardy, N.; Harnly, J.; Higashi, R.; Kopka, J.; Lane, A. N.; Lindon, J. C.; Marriott, P.; Nicholls, A. W.; Reily, M. D.; Thaden, J. J.; Viant, M. R.: Proposed minimum reporting standards for chemical analysis. Metabolomics 3 (3), S. 211 - 221 (2007)

Engelsberger, W. R.; Erban, A.; Kopka, J.; Schulze, W. X.: Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods 2, S. 14 (2006)

Kopka, J.: Current challenges and developments in GC-MS based metabolite profiling technology. Journal of Biotechnology 124 (1), S. 312 - 322 (2006)

Lisec, J.; Schauer, N.; Kopka, J.; Willmitzer, L.; Fernie, A. R.: Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1 (1), S. 387 - 396 (2006)

Niehl, A.; Lacomme, C.; Erban, A.; Kopka, J.; Kraemer, U.; Fisahn, J.: Systemic Potato virus X infection induces defence gene expression and accumulation of beta-phenylethylamine-alkaloids in potato. Functional Plant Biology 33 (6), S. 593 - 604 (2006)

Schauer, N.; Semel, Y.; Roessner, U.; Gur, A.; Balbo, I.; Carrari, F.; Pleban, T.; Perez-Melis, A.; Bruedigam, C.; Kopka, J. et al.; Willmitzer, L.; Zamir, D.; Fernie, A. R.: Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24 (4), S. 447 - 454 (2006)

Skirycz, A.; Reichelt, M.; Burow, M.; Birkemeyer, C.; Rolcik, J.; Kopka, J.; Zanor, M. I.; Gershenzon, J.; Strnad, M.; Szopa, J. et al.; Mueller-Roeber, B.; Witt, I.: DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant Journal 47 (1), S. 10 - 24 (2006)

Damiani, I.; Morreel, K.; Danoun, S.; Goeminne, G.; Yahiaoui, N.; Marque, C.; Kopka, J.; Messens, E.; Goffner, D.; Boerjan, W. et al.; Boudet, A. M.; Rochange, S.: Metabolite profiling reveals a role for atypical cinnamyl alcohol dehydrogenase CAD1 in the synthesis of coniferyl alcohol in tobacco xylem. Plant Molecular Biology 59 (5), S. 753 - 769 (2005)

Desbrosses, G. G.; Kopka, J.; Udvardi, M. K.: Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiology 137 (4), S. 1302 - 1318 (2005)

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), S. 1635 - 1638 (2005)

Lisso, J.; Steinhauser, D.; Altmann, T.; Kopka, J.; Muessig, C.: Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33 (8), S. 2685 - 2696 (2005)

Lohse, S.; Schliemann, W.; Ammer, C.; Kopka, J.; Strack, D.; Fester, T.: Organization and metabolism of plastids and mitochondria in arbuscular mycorrhizal roots of Medicago truncatula. Plant Physiology 139 (1), S. 329 - 340 (2005)

Nikiforova, V. J.; Kopka, J.; Tolstikov, V.; Fiehn, O.; Hopkins, L.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of arabidopsis plants. Plant Physiology 138 (1), S. 304 - 318 (2005)

Rautengarten, C.; Steinhauser, D.; Buessis, D.; Stintzi, A.; Schaller, A.; Kopka, J.; Altmann, T.: Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1 (4), S. e40 (2005)

Schauer, N.; Steinhauser, D.; Strelkov, S.; Schomburg, D.; Allison, G.; Moritz, T.; Lundgren, K.; Roessner-Tunali, U.; Forbes, M. G.; Willmitzer, L. et al.; Fernie, A. R.; Kopka, J.: GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579 (6), S. 1332 - 1337 (2005)

Scholz, M.; Kaplan, F.; Guy, C. L.; Kopka, J.; Selbig, J.: Non-linear PCA: a missing data approach. Bioinformatics 21 (20), S. 3887 - 3895 (2005)

Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), S. 891 - 903 (2005)

Bino, R. J.; Hall, R. D.; Fiehn, O.; Kopka, J.; Saito, K.; Draper, J.; Nikolau, B. J.; Mendes, P.; Roessner-Tunali, U.; Beale, M. H. et al.; Trethewey, R. N.; Lange, B. M.; Wurtele, E. S.; Sumner, L. W.: Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9 (9), S. 418 - 425 (2004)