Tohge, T., Watanabe, M., Hoefgen, R. & Fernie, A. R. Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science 4, 62 (2013).

Watanabe, M., Balazadeh, S., Tohge, T., Erban, A., Giavalisco, P., Kopka, J., Mueller-Roeber, B., Fernie, A. R. & Hoefgen, R. Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162, 1290–1310 (2013).

Hubberten, H. M., Drozd, A., Tran, B. V., Hesse, H. & Hoefgen, R. Local and systemic regulation of sulfur homeostasis in roots of Arabidopsis thaliana. Plant Journal 72, 625–635 (2012).

Hubberten, H.-M., Klie, S., Caldana, C., Degenkolbe, T., Willmitzer, L. & Hoefgen, R. An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70, 666–677 (2012).

Nguyen, H. C., Hoefgen, R. & Hesse, H. Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase. Journal of Experimental Botany 63, 5991–6001 (2012).

Bloem, E., Rubekin, K., Haneklaus, S., Banfalvi, Z., Hesse, H. & Schnug, E. H(2)S and COS Gas Exchange of Transgenic Potato Lines with Modified Expression Levels of Enzymes Involved in Sulphur Metabolism. Journal of Agronomy and Crop Science 197, 311–321 (2011).

Giavalisco, P., Li, Y., Matthes, A., Eckhardt, A., Hubberten, H.-M., Hesse, H., Segu, S., Hummel, J., Koehl, K. I. & Willmitzer, L. Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal 68, 364–376 (2011).

Stuttmann, J., Hubberten, H.-M., Rietz, S., Kaur, J., Muskett, P., Guerois, R., Bednarek, P., Hoefgen, R. & Parker, J. E. Perturbation of Arabidopsis Amino Acid Metabolism Causes Incompatibility with the Adapted Biotrophic Pathogen Hyaloperonospora arabidopsidis. Plant Cell 23, 2788–2803 (2011).

Astolfi, S., Zuchi, S., Hubberten, H.-M., Pinton, R. & Hoefgen, R. Supply of sulphur to S-deficient young barley seedlings restores their capability to cope with iron shortage. Journal of Experimental Botany 61, 799–806 (2010).

Girin, T., El-Kafafi, E. S., Widiez, T., Erban, A., Hubberten, H.-M., Kopka, J., Hoefgen, R., Gojon, A. & Lepetit, M. Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant. Plant Physiology 153, 1250–1260 (2010).

Krueger, S., Donath, A., Lopez-Martin, M. C., Hoefgen, R., Gotor, C. & Hesse, H. Impact of sulfur starvation on cysteine biosynthesis in T-DNA mutants deficient for compartment-specific serine-acetyltransferase. Amino Acids 39, 1029–1042 (2010).

Tischner, R., Koltermann, M., Hesse, H. & Plath, M. Early responses of Arabidopsis thaliana to infection by Verticillium longisporum. Physiological and Molecular Plant Pathology 74, 419–427 (2010).

Watanabe, M., Hubberten, H.-M., Saito, K. & Hoefgen, R. General Regulatory Patterns of Plant Mineral Nutrient Depletion as Revealed by serat Quadruple Mutants Disturbed in Cysteine Synthesis. Molecular Plant 3, 438–466 (2010).

Wulff-Zottele, C., Gatzke, N., Kopka, J., Orellana, A., Hoefgen, R., Fisahn, J. & Hesse, H. Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion. Plant Cell and Environment 33, 1974–1988 (2010).

Krueger, S., Niehl, A., Martin, M. C., Steinhauser, D., Donath, A., Hildebrandt, T., Romero, L. C., Hoefgen, R., Gotor, C. & Hesse, H. Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell and Environment 32, 349–367 (2009).

Boettcher, C., Centeno, D., Freitag, J., Hoefgen, R., Koehl, K. I., Kopka, J., Kroymann, J., Matros, A., Mock, H.-P., Neumann, S., Pfalz, M., von Roepenack-Lahaye, E., Schauer, N., Trenkamp, S., Zurbriggen, M. & Fernie, A. R. Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132, 136–149 (2008).

Falkenberg, B., Witt, I., Zanor, M. I., Steinhauser, D., Mueller-Roeber, B., Hesse, H. & Hoefgen, R. Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59, 2831–2846 (2008).

Rinder, J., Casazza, A. P., Hoefgen, R. & Hesse, H. Regulation of aspartate-derived amino acid homeostasis in potato plants (Solanum tuberosum L.) by expression of E-coli homoserine kinase. Amino Acids 34, 213–222 (2008).

Stiller, I., Dancs, G., Hesse, H., Hoefgen, R. & Banfalvi, Z. Improving the nutritive value of tubers: Elevation of cysteine and glutathione contents in the potato cultivar White Lady by marker-free transformation. Journal of Biotechnology 128, 335–343 (2007).

Szymanski, J., Bielecka, M., Carrari, F., Fernie, A. R., Hoefgen, R. & Nikiforova, V. J. On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68, 2163–2175 (2007).