Publikationen von Alisdair Fernie

Zeitschriftenartikel (49)

1.
Zeitschriftenartikel
Guadalupe Dominguez, P.; Conti, G.; Duffy, T.; Insani, M.; Alseekh, S.; Asurmendi, S.; Fernie, A. R.; Carrari, F.: Multi-omics analyses reveal the roles of the ASR1 transcription factor in tomato fruits. Journal of Experimental Botany (2021)
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Ancín, M.; Larraya, L.; Florez-Sarasa, I. D.; Bénard, C.; Fernández-San Millán, A.; Veramendi, J.; Gibon, Y.; Fernie, A. R.; Aranjuelo, I.; Farran, I.: Thioredoxin m overexpression in chloroplasts alters carbon and nitrogen partitioning in tobacco plants. Journal of Experimental Botany (2021)
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Zimmermann, S. E.; Benstein, R. M.; Flores-Tornero, M.; Blau, S.; Anoman, A. D.; Rosa-Téllez, S.; Gerlich, S. C.; Salem, M.A.; Alseekh, S.; Kopriva, S. et al.; Wewer, V.; Flügge, U.-I.; Jacoby, R. P.; Fernie, A. R.; Giavalisco, P.; Ros, R.; Krueger, S.: The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism. Plant Physiology (2021)
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de Souza, L. P.; Alseekh, S.; Scossa, F.; Fernie, A. R.: Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods (2021)
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5.
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Borghi, M.; Fernie, A. R.: From flowers to seeds: how the metabolism of flowers frames plant reproduction. The biochemist: the bulletin of the Biochemical Society 43 (3), S. 14 - 18 (2021)
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Cortinovis, G.; Oppermann, M.; Neumann, K.; Graner, A.; Gioia, T.; Marsella, M.; Alseekh, S.; Fernie, A. R.; Papa, R.; Bellucci, E. et al.; Bitocchi, E.: Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean. Current Protocols in Plant Biology 1 (5), e133 (2021)
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Fernie, A. R.: Associating primary and specialized metabolism with salt induced osmotic stress tolerance in maize. New Phytologist 230 (6), S. 2991 - 2093 (2021)
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Zhang, Y.; Giese, J.; Kerbler, S.M.-L.; Siemiatkowska, B.; de Souza, L. P.; Alpers, J.; Medeiros, D.B.; Hincha, D. K.; Daloso, D. M.; Stitt, M. et al.; Finkemeier, I.; Fernie, A. R.: Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant (2021)
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9.
Zeitschriftenartikel
Scossa, F.; Fernie, A. R.: When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science 26 (6), S. 543 - 545 (2021)
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Altman, A.; Fan, L.; Foyer, C.; Cowling, W.; Mittler, R.; Qaim, M.; Weber, A. P. M.; Reynolds, M.; Varshney, R. K.; Fernie, A. R.: Past and Future Milestones of Plant Breeding. Trends in Plant Science 26 (6), S. 530 - 538 (2021)
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11.
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Aneklaphakij, C.; Saigo, T.; Watanabe, M.; Naake, T.; Fernie, A. R.; Bunsupa, S.; Satitpatipan, V.; Tohge, T.: Diversity of Chemical Structures and Biosynthesis of Polyphenols in Nut-Bearing Species. Frontiers in Plant Science 12, 642581 (2021)
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Baptistella, J. L. C.; Llerena, J. P. P.; Domingues-Júnior, A. P.; Fernie, A. R.; Favarin, J. L.; Mazzafera, P.: Differential responses of three Urochloa species to low phosphorus availability. Annals of Applied Biology (2021)
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Barja, M.V.; Ezquerro, M.; Beretta, S.; Diretto, G.; Florez-Sarasa, I.; Feixes, E.; Fiore, A.; Karlova, R.; Fernie, A. R.; Beekwilder, J. et al.; Rodríguez-Concepción, M.: Several geranylgeranyl diphosphate synthase isoforms supply metabolic substrates for carotenoid biosynthesis in tomato. New Phytologist 231 (1), S. 255 - 272 (2021)
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14.
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Bottcher, A.; Domingues Júnior, A.P.; de Souza, L. P.; Tohge, T.; Araujo, W. L.; Fernie, A. R.; Mazzafera, P.: Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, e2921 (2021)
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15.
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Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, 106678 (2021)
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16.
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Brotman, Y.; Llorente-Wiegand, C.; Oyong, G.; Badoni, S.; Misra, G.; Anacleto, R.; Parween, S.; Pasion, E.; Tiozon Jr., R. N.; Anonuevo, J. J. et al.; Krishna deGuzman, M.; Alseekh, S.; Mbanjo, E. G.N.; Boyd, L. A.; Fernie, A. R.; Sreenivasulu, N.: The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106 (2), S. 507 - 527 (2021)
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Cárcamo-Fincheira, P.; Reyes-Díaz, M.; Omena-García, R.P.; Vargas, J.R.; Alvear, M.; Florez-Sarasa, I.; Rosado-Souza, L.; Rengel, Z.; Fernie, A. R.; Nunes-Nesi, A. et al.; Inostroza-Blancheteau, C.: Metabolomic analyses of highbush blueberry (Vaccinium corymbosum L.) cultivars revealed mechanisms of resistance to aluminum toxicity. Environmental and Experimental Botany 183, 104338 (2021)
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Casatejada-Anchel, R.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Anoman, A. D.; Nebauer, S. G.; Torres-Moncho, A.; Fernie, A. R.; Ros, R.: Phosphoglycerate dehydrogenase genes differentially affect Arabidopsis metabolism and development. Plant Science 306, 110863 (2021)
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Zeitschriftenartikel
Coluccio Leskow, C.; Conte, M.; Del Pozo, T.; Bermúdez, L.; Lira, B.S.; Gramegna, G.; Baroli, I.; Burgos, E.; Zavallo, D.; Kamenetzky, L. et al.; Asís, R.; Gonzalez, M.; Fernie, A. R.; Rossi, M.; Osorio, S.; Carrari, F.: The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set, and yield in tomato. Journal of Experimental Botany 72 (7), S. 2525 - 2543 (2021)
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20.
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da Fonseca-Pereira, P.; Souza, P. V. L.; Fernie, A. R.; Timm, S.; Daloso, D. M.; Araújo, W. L.: Thioredoxin-mediated regulation of (photo)respiration and central metabolism. Journal of Experimental Botany (2021)
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21.
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Fernie, A. R.: Using landrace transcription factor alleles to increase yield in modern rice under low input agriculture. Journal of Plant Physiology 258-259, 153362 (2021)
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22.
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Fernie, A. R.; Alseekh, S.; Liu, J.; Yan, J.: Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology (2021)
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Fernie, A. R.; Sonnewald, U.: Plant biotechnology for sustainable agriculture and food safety. Journal of Plant Physiology 261, 153416 (2021)
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Filippou, P.; Zarza, X.; Antoniou, C.; Obata, T.; Villarroel, C.A.; Ganopoulos, I.; Harokopos, V.; Gohari, G.; Aidinis, V.; Madesis, P. et al.; Christou, A.; Fernie, A. R.; Tiburcio, A.F.; Fotopoulos, V.: Systems biology reveals key tissue-specific metabolic and transcriptional signatures involved in the response of Medicago truncatula plant genotypes to salt stress. Computational and Structural Biotechnology Journal 19, S. 2133 - 2147 (2021)
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25.
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Florez-Sarasa, I.; Welchen, E.; Racca, S.; Gonzalez, D.H.; Vallarino, J. G.; Fernie, A. R.; Ribas-Carbo, M.; Del-Saz, N.F.: Cytochrome c deficiency differentially affects the in vivo mitochondrial electron partitioning and primary metabolism depending on the photoperiod. Plants 10 (3), 444 (2021)
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Freire, F.B.S.; Bastos, R.L.G.; Bret, R.S.C.; Cândido-Sobrinho, S.A.; Medeiros, D.B.; Antunes, W.C.; Fernie, A. R.; Daloso, D.M.: Mild reductions in guard cell sucrose synthase 2 expression leads to slower stomatal opening and decreased whole plant transpiration in Nicotiana tabacum L. Environmental and Experimental Botany 184, 104370 (2021)
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27.
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Gill, R. A.; Scossa, F.; King, G. J.; Golicz, A.; Tong, C.; Snowdon, R. J.; Fernie, A. R.; Liu, S.: On the Role of Transposable Elements in the Regulation of Gene Expression and Subgenomic Interactions in Crop Genomes. Critical Reviews in Plant Sciences 40 (2), S. 157 - 189 (2021)
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28.
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Israeli, A.; Burko, Y.; Shleizer-Burko, S.; Zelnik, I. D.; Sela, N.; Hajirezaei, M. R.; Fernie, A. R.; Tohge, T.; Ori, N.; Bar, M.: Coordinating the morphogenesis-differentiation balance by tweaking the cytokinin-gibberellin equilibrium. PLoS Genetics 17 (4), e1009537 (2021)
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29.
Zeitschriftenartikel
Jiang, L.; Yoshida, T.; Stiegert, S.; Yu, J.; Alseekh, S.; Lenhard, M.; Pérez-Alfocea, F.; Fernie, A. R.: Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185 (2), S. 352 - 368 (2021)
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Krahmer, J.; Abbas, A.; Mengin, V.; Ishihara, H.; Romanowski, A.; Furniss, J. J.; Moraes, T. A.; Krohn, N.; Annunziata, M. G.; Feil, R. et al.; Alseekh, S.; Obata, T.; Fernie, A. R.; Stitt, M.; Halliday, K. J.: Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72 (8), S. 3263 - 3278 (2021)
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31.
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Lazare, S.; Bechar, D.; Garbowicz, K.; Fernie, A. R.; Brotman, Y.; Zaccai, M.: When vegetation indicates reproduction: the affinity between leaf morphology and flowering commitment in the lily meristem. Physiologia Plantarum (2021)
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32.
Zeitschriftenartikel
Liu, J.; Fernie, A. R.; Yan, J.: Crop breeding – From experience-based selection to precision design. Journal of Plant Physiology 256, 153313 (2021)
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Luzarowski, M.; Vicente, R.; Kiselev, A.; Wagner, M.; Schlossarek, D.; Erban, A.; de Souza, L. P.; Childs, D.; Wojciechowska, I.; Luzarowska, U. et al.; Gorka, M.; Sokolowska, E.; Kosmacz, M.; Moreno, J.C.; Brzezinska, A.; Vegesna, B.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4 (1), 181 (2021)
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Martín-Pizarro, C.; Vallarino, J. G.; Osorio, S.; Meco, V.; Urrutia, M.; Pillet, J.; Casañal, A.; Merchante, C.; Amaya, I.; Willmitzer, L. et al.; Fernie, A. R.; Giovannoni, J. J.; Botella, M. A.; Valpuesta, V.; Posé, D.: The NAC transcription factor FaRIF controls fruit ripening in strawberry. The Plant Cell (2021)
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35.
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Mou, J.; Zhang, Z.; Qiu, H.; Lu, Y.; Zhu, X.; Fan, Z.; Zhang, Q.; Ye, J.; Fernie, A. R.; Cheng, Y. et al.; Deng, X.; Wen, W.: Multiomics-based dissection of citrus flavonoid metabolism using a Citrus reticulata × Poncirus trifoliata population. Horticulture Research 8 (1), 56 (2021)
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Omidbakhshfard, M. A.; Sokolowska, E.; Di Vittori, V.; de Souza, L. P.; Kuhalskaya, A.; Brotman, Y.; Alseekh, S.; Fernie, A. R.; Skirycz, A.: Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2 (4), 100235 (2021)
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37.
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Pereira, L.; Sapkota, M.; Alonge, M.; Zheng, Y.; Zhang, Y.; Razifard, H.; Taitano, N. K.; Schatz, M. C.; Fernie, A. R.; Wang, Y. et al.; Fei, Z.; Caicedo, A. L.; Tieman, D. M.; van der Knaap, E.: Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science 12, 642828 (2021)
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38.
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Ren, Y.; Li, M.; Guo, S.; Sun, H.; Zhao, J.; Zhang, J.; Liu, G.; He, H.; Tian, S.; Yu, Y. et al.; Gong, G.; Zhang, H.; Zhang, X.; Alseekh, S.; Fernie, A. R.; Scheller, H. V.; Xu, Y.: Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell (2021)
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Sánchez-Guerrero, A.; Nadal, M.; Florez-Sarasa, I.; Ribas-Carbó, M.; Vallarino, J. G.; Brasi-Velasco, S. D.; Fernie, A. R.; Flexas, J.; Jiménez, A.; Sevilla, F.: Decreased Levels of Thioredoxin o1 Influences Stomatal Development and Aperture but Not Photosynthesis under Non-Stress and Saline Conditions. International Journal of Molecular Sciences 22 (3), 1063 (2021)
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Schulz, E.; Tohge, T.; Winkler, J. B.; Albert, A.; Schäffner, A. R.; Fernie, A. R.; Zuther, E.; Hincha, D. K.: Natural Variation among Arabidopsis Accessions in the Regulation of Flavonoid Metabolism and Stress Gene Expression by Combined UV Radiation and Cold. Plant and Cell Physiology (2021)
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Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)
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42.
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Scossa, F.; Fernie, A. R.: Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, S. 1579 - 1594 (2021)
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43.
Zeitschriftenartikel
Staykov, N. S.; Angelov, M.; Petrov, V.; Minkov, P.; Kanojia, A.; Guinan, K. J.; Alseekh, S.; Fernie, A. R.; Sujeeth, N.; Gechev, T. S.: An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11 (1), 24 (2021)
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44.
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Tiozon, R.J.N.; Fernie, A. R.; Sreenivasulu, N.: Meeting human dietary vitamin requirements in the staple rice via strategies of biofortification and post-harvest fortification. Trends in Food Science and Technology 109, S. 65 - 82 (2021)
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45.
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Wu, S.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Metabolomic Analysis of Natural Variation in Arabidopsis. Methods in Molecular Biology 2200, S. 393 - 411 (2021)
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Yan, S.; Liu, Q.; Naake, T.; Huang, W.; Chen, M.; Kong, Q.; Zhang, S.; Li, W.; Li, X.; Liu, Q. et al.; Yang, J.; Fernie, A. R.; Liu, B.: OsGF14b modulates defense signaling pathways in rice panicle blast response. Crop Journal (2021)
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47.
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Yoshida, T.; Fernie, A. R.; Shinozaki, K.; Takahashi, F.: Long-distance stress and developmental signals associated with abscisic acid signaling in environmental responses. The Plant Journal 105 (2 - SI), S. 477 - 488 (2021)
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48.
Zeitschriftenartikel
Zhang, W.; Luo, C.; Scossa, F.; Zhang, Q.; Usadel, B.; Fernie, A. R.; Mei, H.; Wen, W.: A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants. The Plant Journal 105 (1), S. 197 - 208 (2021)
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49.
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Zhao, X.; Zeng, X.; Lin, N.; Yu, S.; Fernie, A. R.; Zhao, J.: CsbZIP1-CsMYB12 mediates the production of bitter-tasting flavonols in tea plants (Camellia sinensis) through a coordinated activator-repressor network. HORTICULTURE RESEARCH 8 (1), 110 (2021)
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Buchkapitel (2)

50.
Buchkapitel
Alseekh, S.; Fernie, A. R.: Using Metabolomics to Assist Plant Breeding. In: Crop Breeding: Genetic Improvement Methods, Bd. 2264, S. 33 - 46 (Hg. Tripodi, P.). Springer US, New York, NY (2021)
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