Tohge, T.; Fernie, A. R.: Web-based resources for mass-spectrometry-based metabolomics: A user's guide. Phytochemistry 70 (4), S. 450 - 456 (2009)

Tschoep, H.; Gibon, Y.; Carillo, P.; Armengaud, P.; Szecowka, M.; Nunes-Nesi, A.; Fernie, A. R.; Koehl, K. I.; Stitt, M.: Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis. Plant, Cell and Environment 32 (3), S. 300 - 318 (2009)

Centeno, D. C.; Oliver, S. N.; Nunes-Nesi, A.; Geigenberger, P.; Machado, D. N.; Loureiro, M. E.; Silva, M. A. P.; Fernie, A. R.: Metabolic regulation of pathways of carbohydrate oxidation in potato (Solanum tuberosum) tubers. Physiologia Plantarum 133 (4), S. 744 - 754 (2008)

Fait, A.; Fromm, H.; Walther, D.; Galili, G.; Fernie, A. R.: Highway or byway: the metabolic role of the GABA shunt in plants. Trends in Plant Science 13 (1), S. 14 - 19 (2008)

Schippers, J. H. M.; Nunes-Nesi, A.; Apetrei, R.; Hille, J.; Fernie, A. R.; Dijkwel, P. P.: The Arabidopsis onset of leaf death5 Mutation of Quinolinate Synthase Affects Nicotinamide Adenine Dinucleotide Biosynthesis and Causes Early Ageing. The Plant Cell 20 (10), S. 2909 - 2925 (2008)

Sweetlove, L. J.; Fell, D.; Fernie, A. R.: Getting to grips with the plant metabolic network. Biochemical Journal 409 (1), S. 27 - 41 (2008)

Fernie, A. R.: The future of metabolic phytochemistry: Larger numbers of metabolites, higher resolution, greater understanding. Phytochemistry 68 (22-24), S. 2861 - 2880 (2007)

Lytovchenko, A.; Sonnewald, U.; Fernie, A. R.: The complex network of non-cellulosic carbohydrate metabolism. Current Opinion in Plant Biology 10 (3), S. 227 - 235 (2007)

Nunes-Nesi, A.; Sweetlove, L. J.; Fernie, A. R.: Operation and function of the tricarboxylic acid cycle in the illuminated leaf. Physiologia Plantarum 129 (1), S. 45 - 56 (2007)

Sweetlove, L. J.; Fait, A.; Nunes-Nesi, A.; Williams, T.; Fernie, A. R.: The mitochondrion: An integration point of cellular metabolism and signalling. Critical Reviews in Plant Sciences 26 (1), S. 17 - 43 (2007)

Carrari, F.; Baxter, C.; Usadel, B.; Urbanczyk-Wochniak, E.; Zanor, M. I.; Nunes-Nesi, A.; Nikiforova, V.; Centero, D.; Ratzka, A.; Pauly, M. et al.; Sweetlove, L. J.; Fernie, A. R.: Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiology 142 (4), S. 1380 - 1396 (2006)

Carrari, F.; Fernie, A. R.: Metabolic regulation underlying tomato fruit development. Journal of Experimental Botany 57 (9), S. 1883 - 1897 (2006)

Fernie, A. R.; Tadmor, Y.; Zamir, D.: Natural genetic variation for improving crop quality. Current Opinion in Plant Biology 9 (2), S. 196 - 202 (2006)

Schauer, N.; Fernie, A. R.: Plant metabolomics: towards biological function and mechanism. Trends in Plant Science 11 (10), S. 508 - 516 (2006)

Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, S. 535 (2006)

Sweetlove, L. J.; Fernie, A. R.: Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168 (1), S. 9 - 23 (2005)

Carrari, F.; Fernie, A. R.; Iusem, N. D.: Heard it through the grapevine? ABA and sugar cross-talk: the ASR story. Trends in Plant Science 9 (2), S. 57 - 59 (2004)

Fernie, A. R.; Carrari, F.; Sweetlove, L. J.: Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport. Current Opinion in Plant Biology 7 (3), S. 254 - 261 (2004)

Fernie, A. R.; Trethewey, R. N.; Krotzky, A. J.; Willmitzer, L.: Innovation - Metabolite profiling: from diagnostics to systems biology. Nature Reviews Molecular Cell Biology 5 (9), S. 763 - 769 (2004)

Geigenberger, P.; Stitt, M.; Fernie, A. R.: Metabolic control analysis and regulation of the conversion of sucrose to starch in growing potato tubers. Plant Cell and Environment 27 (6), S. 655 - 673 (2004)

Fernie, A. R.: Metabolome characterisation in plant system analysis. Functional Plant Biology 30 (1), S. 111 - 120 (2003)

Stitt, M.; Fernie, A. R.: From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Biotechnology 14 (2), S. 136 - 144 (2003)

Fernie, A. R.; Willmitzer, L.; Trethewey, R. N.: Sucrose to starch: a transition in molecular plant physiology. Trends in Plant Science 7 (1), S. 35 - 41 (2002)

Roessner, U.; Willmitzer, L.; Fernie, A. R.: Metabolic profiling and biochemical phenotyping of plant systems. Plant Cell Reports 21 (3), S. 189 - 196 (2002)

Geigenberger, P.; Fernie, A. R.; Gibon, Y.; Christ, M.; Stitt, M.: Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers. Journal of Biological Chemistry 381 (8), S. 723 - 740 (2000)