Publications of J. Kopka

Jenkins, H.; Hardy, N.; Beckmann, M.; Draper, J.; Smith, A. R.; Taylor, J.; Fiehn, O.; Goodacre, R.; Bino, R. J.; Hall, R. et al.; Kopka, J.; Lane, G. A.; Lange, B. M.; Liu, J. R.; Mendes, P.; Nikolau, B. J.; Oliver, S. G.; Paton, N. W.; Rhee, S.; Roessner-Tunali, U.; Saito, K.; Smedsgaard, J.; Sumner, L. W.; Wang, T.; Walsh, S.; Wurtele, E. S.; Kell, D. B.: A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology 22 (12), pp. 1601 - 1606 (2004)

Kaplan, F.; Kopka, J.; Haskell, D. W.; Zhao, W.; Schiller, K. C.; Gatzke, N.; Sung, D. Y.; Guy, C. L.: Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiology 136 (4), pp. 4159 - 4168 (2004)

Klotke, J.; Kopka, J.; Gatzke, N.; Heyer, A. G.: Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation. Plant Cell and Environment 27 (11), pp. 1395 - 1404 (2004)

Luedemann, A.; Weicht, D.; Selbig, J.; Kopka, J.: PaVESy: Pathway visualization and editing system. Bioinformatics 20 (16), pp. 2841 - 2844 (2004)

Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), pp. 1928 - 1939 (2004)

Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), pp. 3647 - 3651 (2004)

Birkemeyer, C.; Kolasa, A.; Kopka, J.: Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993 (1-2), pp. 89 - 102 (2003)

Hunt, L.; Mills, L. N.; Pical, C.; Leckie, C. P.; Aitken, F. L.; Kopka, J.; Mueller-Roeber, B.; McAinsh, M. R.; Hetherington, A. M.; Gray, J. E.: Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34 (1), pp. 47 - 55 (2003)

Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), pp. 989 - 993 (2003)

Wagner, C.; Sefkow, M.; Kopka, J.: Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62 (6), pp. 887 - 900 (2003)

Bohmert, K.; Balbo, I.; Kopka, J.; Mittendorf, V.; Nawrath, C.; Poirier, Y.; Tischendorf, G.; Trethewey, R. N.; Willmitzer, L.: Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211 (6), pp. 841 - 845 (2000)

Fiehn, O.; Kopka, J.; Doermann, P.; Altmann, T.; Trethewey, R. N.; Willmitzer, L.: Metabolite profiling for plant functional genomics. Nature Biotechnology 18 (11), pp. 1157 - 1161 (2000)

Fiehn, O.; Kopka, J.; Trethewey, R. N.; Willmitzer, L.: Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Analytical Chemistry 72 (15), pp. 3573 - 3580 (2000)

Roessner, U.; Wagner, C.; Kopka, J.; Trethewey, R. N.; Willmitzer, L.: Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23 (1), pp. 131 - 142 (2000)

Aitken, F. L.; Pical, C.; Mueller-Roeber, B.; Kopka, J.; Gray, J. E.: Phosphoinositide signal transduction in guard cells. Biochemical Society Transactions 26 (4), p. S397 (1998)

Kopka, J.; Pical, C.; Gray, J. E.; Mueller-Roeber, B.: Molecular and enzymatic characterization of three phosphoinositide-specific phospholipase C isoforms from potato. Plant Physiology 116 (1), pp. 239 - 250 (1998)

Kopka, J.; Ludewig, M.; Mueller-Roeber, B.: Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Plant Physiology 113 (3), pp. 997 - 1002 (1997)

Kopka, J.; Provart, N. J.; Mueller-Roeber, B.: Potato guard cells respond to drying soil by a complex change in the expression of genes related to carbon metabolism and turgor regulation. Plant Journal 11 (4), pp. 871 - 882 (1997)

Kopka, J.; Ohlrogge, J. B.; Jaworski, J. G.: Analysis of in-Vivo Levels of Acyl-Thioesters with Gas-Chromatography Mass-Spectrometry of the Butylamide Derivative. Analytical Biochemistry 224 (1), pp. 51 - 60 (1995)

Kopka, J.; Robers, M.; Schuch, R.; Spener, F.: Acyl Carrier Proteins from Developing Seeds of Cuphea-Lanceolata Ait. Planta 191 (1), pp. 102 - 111 (1993)