Publikationen von Z. Nikoloski

Zeitschriftenartikel (178)

141.
Zeitschriftenartikel
Zakharova, A., Nikoloski, Z. & Koseska, A. Dimensionality reduction of multistable biological systems. Bulletin of Mathematical Biology 75, 373–392 (2013).
142.
Zeitschriftenartikel
Araujo, W. L., Nunes-Nesi, A., Nikoloski, Z., Sweetlove, L. J. & Fernie, A. R. Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues. Plant, Cell and Environment 35, 1–21 (2012).
143.
Zeitschriftenartikel
Basler, G., Grimbs, S. & Nikoloski, Z. Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 109, 186–191 (2012).
144.
Zeitschriftenartikel
Güell, O., Sagués, F., Basler, G., Nikoloski, Z. & Serrano, M. S. Assessing the significance of knockout cascades in metabolic networks. Journal of Computational Interdisciplinary Sciences 3, 45–53 (2012).
145.
Zeitschriftenartikel
Kleessen, S., Antonio, C., Sulpice, R., Laitinen, R., Fernie, A. R., Stitt, M. & Nikoloski, Z. Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 3, 1319 (2012).
146.
Zeitschriftenartikel
Kleessen, S., Araujo, W. L., Fernie, A. R. & Nikoloski, Z. Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 287, 11122–11131 (2012).
147.
Zeitschriftenartikel
Kleessen, S., Fernie, A. R. & Nikoloski, Z. A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 3, 217 (2012).
148.
Zeitschriftenartikel
Kleessen, S. & Nikoloski, Z. Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 6, 16 (2012).
149.
Zeitschriftenartikel
Klie, S., Caldana, C. & Nikoloski, Z. Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 3, 249 (2012).
150.
Zeitschriftenartikel
Klie, S., Mutwil, M., Persson, S. & Nikoloski, Z. Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 8, 2233–2241 (2012).
151.
Zeitschriftenartikel
Klie, S. & Nikoloski, Z. The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 3, 115 (2012).
152.
Zeitschriftenartikel
Omidbakhshfard, M. A., Omranian, N., Ahmadi, F. S., Nikoloski, Z. & Mueller-Roeber, B. Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana. Plant Signaling & Behavior 7, 1095–1102 (2012).
153.
Zeitschriftenartikel
Omranian, N., Mueller-Roeber, B. & Nikoloski, Z. PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Molecular BioSystems 8, 1121–1127 (2012).
154.
Zeitschriftenartikel
Osorio, S., Alba, R., Nikoloski, Z., Kochevenko, A., Fernie, A. R. & Giovannoni, J. J. Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior. Plant Physiology 159, 1713–1729 (2012).
155.
Zeitschriftenartikel
Sajitz-Hermstein, M. & Nikoloski, Z. Restricted cooperative games on metabolic networks reveal functionally important reactions. Journal of Theoretical Biology 314, 192–203 (2012).
156.
Zeitschriftenartikel
Toepfer, N., Jozefczuk, S. & Nikoloski, Z. Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli. BMC Systems Biology 6, 148 (2012).
157.
Zeitschriftenartikel
Toubiana, D., Semel, Y., Tohge, T., Beleggia, R., Cattivelli, L., Rosental, L., Nikoloski, Z., Zamir, D., Fernie, A. R. & Fait, A. Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations. PLoS Genetics 8, e1002612 (2012).
158.
Zeitschriftenartikel
Larhlimi, A., Blachon, S., Selbig, J. & Nikoloski, Z. Robustness of metabolic networks: A review of existing definitions. Biosystems 106, 1–8 (2011).
159.
Zeitschriftenartikel
Arnold, A. & Nikoloski, Z. A quantitative comparison of CalvinBenson cycle models. Trends in Plant Science 16, 676–683 (2011).
160.
Zeitschriftenartikel
Basler, G., Ebenhoeh, O., Selbig, J. & Nikoloski, Z. Mass-balanced randomization of metabolic networks. Bioinformatics 27, 1397–1403 (2011).
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