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Journal Article (196)
1.
Journal Article
10 (1), 54 (2024)
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches. npj Systems biology and applications 2.
Journal Article
33 (10), e16780 (2024)
Strategies to identify and dissect trade-offs in plants. Molecular Ecology 3.
Journal Article
81 (1), 117 (2024)
The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cellular and Molecular Life Sciences 4.
Journal Article
82, pp. 216 - 224 (2024)
Prediction and integration of metabolite-protein interactions with genome-scale metabolic models. Metabolic Engineering 5.
Journal Article
14 (1), 2687 (2023)
Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 6.
Journal Article
13 (1), 5712 (2023)
The unraveling of balanced complexes in metabolic networks. Scientific Reports 7.
Journal Article
14 (1), 986 (2023)
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 8.
Journal Article
14, 1140829 (2023)
A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 9.
Journal Article
80, pp. 184 - 192 (2023)
Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 10.
Journal Article
42, e113595 (2023)
Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 11.
Journal Article
14 (1), 7052 (2023)
Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 12.
Journal Article
19 (10), e1011549 (2023)
PARROT: Prediction of enzyme abundances using protein-constrained metabolic models. PLoS Computational Biology 13.
Journal Article
240 (1), pp. 426 - 438 (2023)
Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 14.
Journal Article
79, pp. 97 - 107 (2023)
Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 15.
Journal Article
19 (9), e1011489 (2023)
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 16.
Journal Article
13, 14589 (2023)
The effective deficiency of biochemical networks. Scientific Reports 17.
Journal Article
14 (1), 4781 (2023)
Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 18.
Journal Article
14 (1), 4897 (2023)
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 19.
Journal Article
19 (7), e1010832 (2023)
Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection. PLoS Computational Biology 20.
Journal Article
33 (10), e16879 (2023)
Models and molecular mechanisms for trade-offs in the context of metabolism. Molecular Ecology