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Book Chapter (6)
201.
Book Chapter
The Sequence Reconstruction Problem. In: Discrete and Topological Models in Molecular Biology, pp. 23 - 43 (Eds. Jonoska , N.; Saito, M.). Springer-Verlag, Berlin, Heidelberg (2014)
202.
Book Chapter
Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)
Proceedings (1)
203.
Proceedings
CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs. Springer International Publishing, Cham (2022)
Conference Paper (3)
204.
Conference Paper
Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. In: Information Processing in Cells and Tissues, pp. 169 - 172. 10th International Conference on Information Processing in Cells and
Tissues (IPCAT), San Diego, CA, September 14, 2015 - September 16, 2015. (2015)
205.
Conference Paper
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. In: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB), pp. I502 - I508. 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) , Basel, SWITZERLAND. (2012)
206.
Conference Paper
Thermodynamic landscapes of randomized large-scale metabolic networks. In: 7th International Workshop on Computational Systems Biology, WCSB 2010, pp. 23 - 26 (Eds. Nykter, M.; Ruusuvuori, P.; Carlberg, C.; Yli-Harja, O.). 7th International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, LUX. Tampere International Center for Signal Processing (2010)
Meeting Abstract (1)
207.
Meeting Abstract
Design and analysis of a reference model of sugar phosphate metabolism. In . First International Workshop on Differential and Integral Equations with Applications in Biology and Medicine 2010, Karlovassi, Samos, Greece, 2010. (2010)
Other (1)
208.
Other
Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions, New Phytologist 190, pp. 273 - 276 (2011)
Editorial (2)
209.
Editorial
14, 1356153 (2023)
Editorial: Isotopic Labeling Approaches for Exploring Plant Metabolism Dynamics. Frontiers in Plant Science 210.
Editorial
191 (4), pp. 2067 - 2069 (2023)
Focus on respiration. Plant Physiology Review Article (15)
211.
Review Article
121 (3), pp. 915 - 930 (2024)
Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes. Biotechnology and Bioengineering 212.
Review Article
67, 108203 (2023)
Model-driven insights into the effects of temperature on metabolism. Biotechnology Advances 213.
Review Article
14, 1178239 (2023)
Systematic comparison of local approaches for isotopically nonstationary metabolic flux analysis. Frontiers in Plant Science 214.
Review Article
21, pp. 452 - 462 (2023)
Tracing and tracking filamentous structures across scales: A systematic review. Computational and Structural Biotechnology Journal 215.
Review Article
20, pp. 2699 - 2712 (2022)
Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward. Computational and Structural Biotechnology Journal 216.
Review Article
78, pp. 5123 - 5138 (2021)
Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 217.
Review Article
38 (8), pp. 1457 - 1470 (2015)
Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 218.
Review Article
6, 49 (2015)
Integration of metabolomics data into metabolic networks. Frontiers in Plant Science 219.
Review Article
5, p. 491 - 491 (2014)
Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 220.
Review Article
15 (4), pp. 667 - 675 (2013)
Comprehensive classification and perspective for modelling photorespiratory metabolism. Plant Biology