Publications of Z. Nikoloski
All genres
Journal Article (195)
41.
Journal Article
34 (1), pp. 557 - 578 (2021)
Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 42.
Journal Article
19, pp. 5255 - 5263 (2021)
Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient. Computational and Structural Biotechnology Journal 43.
Journal Article
187 (4), pp. 2419 - 2434 (2021)
Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 44.
Journal Article
37 (21), pp. 3848 - 3855 (2021)
Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli. Bioinformatics 45.
Journal Article
44 (10), pp. 3398 - 3411 (2021)
Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment 46.
Journal Article
40 (15), e106800 (2021)
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 47.
Journal Article
37 (12), pp. 1717 - 1723 (2021)
GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics 48.
Journal Article
31 (15), pp. 3262 - 3274 (2021)
KATANIN and CLASP function at different spatial scales to mediate microtubule response to mechanical stress in Arabidopsis cotyledons. Current Biology 49.
Journal Article
12 (1), 458 (2021)
A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells. Nature Communications 50.
Journal Article
22 (9), 4790 (2021)
Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation. International Journal of Molecular Sciences 51.
Journal Article
11 (1), 17415 (2021)
A structural property for reduction of biochemical networks. Scientific Reports 52.
Journal Article
37 (18), pp. 2896 - 2904 (2021)
L2,1-norm regularized multivariate regression model with applications to genomic prediction. Bioinformatics 53.
Journal Article
37 (1), pp. 73 - 81 (2021)
PC2P: parameter-free network-based prediction of protein complexes. Bioinformatics 54.
Journal Article
11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 55.
Journal Article
19, pp. 2170 - 2178 (2021)
Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 56.
Journal Article
11, 8544 (2021)
Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis. Scientific Reports 57.
Journal Article
257, 153354 (2021)
Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. Journal of Plant Physiology 58.
Journal Article
36 (9), pp. 2950 - 2951 (2020)
CytoSeg 2.0: automated extraction of actin filaments. Bioinformatics 59.
Journal Article
43 (6), pp. 1376 - 1393 (2020)
Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 60.
Journal Article
Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)