Publikationen von Joachim Kopka | Max-Planck-Institut für Molekulare Pflanzenphysiologie

Max-Planck-Institut für Molekulare Pflanzenphysiologie

Zeitschriftenartikel (189)

61.

Zeitschriftenartikel

Kohl, S.; Hollmann, J.; Erban, A.; Kopka, J.; Riewe, D.; Weschke, W.; Weber, H.: Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling. Journal of Experimental Botany 66 (5), S. 1397 - 1411 (2015)

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62.

Zeitschriftenartikel

Dobritzsch, S.; Weyhe, M.; Schubert, R.; Dindas, J.; Hause, G.; Kopka, J.; Hause, B.: Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. BMC Biology 13, 28 (2015)

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63.

Zeitschriftenartikel

Gaude, N.; Bortfeld, S.; Erban, A.; Kopka, J.; Krajinski, F.: Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells. BMC Plant Biology 15 (1), 234 (2015)

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64.

Zeitschriftenartikel

Glaubitz, U.; Erban, A.; Kopka, J.; Hincha, D. K.; Zuther, E.: High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner. Journal of Experimental Botany 66 (20), S. 6385 - 6397 (2015)

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65.

Zeitschriftenartikel

Klähn, S.; Orf, I.; Schwarz, D.; Matthiessen, J. K. F.; Kopka, J.; Hess, W. R.; Hagemann, M.: Integrated Transcriptomic and Metabolomic Characterization of the Low-Carbon Response Using an ndhR Mutant of Synechocystis sp. PCC 6803. Plant physiology 169 (3), S. 1540 - 156 (2015)

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66.

Zeitschriftenartikel

Li, X.; Lawas, L. M. F.; Malo, R.; Glaubitz, U.; Erban, A.; Mauleon, R.; Heuer, S.; Zuther, E.; Kopka, J.; Hincha, D. K. et al.; Jagadish, K. S. V.: Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress. Plant, Cell and Environment 38 (10), S. 2171 - 2192 (2015)

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67.

Zeitschriftenartikel

Orf, I.; Klähn, S.; Schwarz, D.; Frank, M.; Hess, W. R.; Hagemann, M.; Kopka, J.: Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803. Plant Cell Physiology 169 (3), S. 1787 - 1806 (2015)

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68.

Zeitschriftenartikel

Pant, B.-D.; Pant, P.; Erban, A.; Huhman, D.; Kopka, J.; Scheible, W.-R.: Identification of primary and secondary metabolites with phosphorus status-dependent abundance in Arabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation. Plant, Cell and Environment 38 (1), S. 172 - 187 (2015)

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69.

Zeitschriftenartikel

Sprenger, H.; Rudack, K.; Schudoma, C.; Neumann, A.; Seddig, S.; Peters, R.; Zuther, E.; Kopka, J.; Hincha, D. K.; Walther, D. et al.; Koehl, K. I.: Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 42 (7), S. 655 - 667 (2015)

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70.

Zeitschriftenartikel

Devanathan, S.; Erban, A.; Perez-Torres Jr., R.; Kopka, J.; Makaroff, C. A.: Arabidopsis thaliana Glyoxalase 2-1 Is Required during Abiotic Stress but Is Not Essential under Normal Plant Growth. PLOS ONE 9 (4), e95971 (2014)

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71.

Zeitschriftenartikel

Gao, J.; van Kleeff, P. J. M.; Oecking, C.; Li, K. W.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A. H.: Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins. The Plant Journal 80 (5), S. 785 - 796 (2014)

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72.

Zeitschriftenartikel

Hemme, D.; Veyel, D.; Mühlhaus, T.; Sommer, F.; Jueppner, J.; Unger, A.-K.; Sandmann, M.; Fehrle, I.; Schönfelder, S.; Steup, M. et al.; Geimer, S.; Kopka, J.; Giavalisco, P.; Schroda, M.: Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (11), S. 4270 - 4297 (2014)

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73.

Zeitschriftenartikel

Hooks, M. A.; Allwood, J. W.; Harrison, J. K. D.; Kopka, J.; Erban, A.; Goodacre, R.; Balk, J.: Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis. Biochemical Journal 463, S. 309 - 317 (2014)

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74.

Zeitschriftenartikel

Meret, M.; Kopetzki, D.; Degenkolbe, T.; Kleessen, S.; Nikoloski, Z.; Tellstroem, V.; Barsch, A.; Kopka, J.; Antonietti, M.; Willmitzer, L.: From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water. RSC Advances 4 (32), S. 16777 - 16781 (2014)

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75.

Zeitschriftenartikel

Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), S. 2310 - 2350 (2014)

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76.

Zeitschriftenartikel

Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast RLP24, RPl24a, RLP24b, ARX1, and jjj1 proteins. Plant Signaling & Behavior 9 (MAR), e28224 (2014)

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77.

Zeitschriftenartikel

Schroeder, F.; Lisso, J.; Obata, T.; Erban, A.; Maximova, E.; Giavalisco, P.; Kopka, J.; Fernie, A. R.; Willmitzer, L.; Muessig, C.: Consequences of induced brassinosteroid deficiency in Arabidopsis leaves. BMC Plant Biology 14, 309 (2014)

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78.

Zeitschriftenartikel

Schwarz, D.; Orf, I.; Kopka, J.; Hagemann, M.: Effects of Inorganic Carbon Limitation on the Metabolome of the Synechocystis sp. PCC 6803 Mutant Defective in glnB Encoding the Central Regulator PII of Cyanobacterial C/N Acclimation. Metabolites 4 (2), S. 232 - 247 (2014)

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79.

Zeitschriftenartikel

Veyel, D.; Erban, A.; Fehrle, I.; Kopka, J.; Schroda, M.: Rationales and Approaches for Studying Metabolism in Eukaryotic Microalgae. Metabolites 4 (2), S. 184 - 217 (2014)

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80.

Zeitschriftenartikel

Agudelo-Romero, P.; Erban, A.; Sousa, L.; Pais, M. S.; Kopka, J.; Fortes, A. M.: Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars. PLoS One 8 (4), e60422 (2013)

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81.

Zeitschriftenartikel

Degenkolbe, T.; Do, P. T.; Kopka, J.; Zuther, E.; Hincha, D. K.; Koehl, K. I.: Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling. PLoS One 8 (5), e63637 (2013)

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82.

Zeitschriftenartikel

Do, P. T.; Degenkolbe, T.; Erban, A.; Heyer, A. G.; Kopka, J.; Koehl, K. I.; Hincha, D. K.; Zuther, E.: Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8 (4), e60325 (2013)

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83.

Zeitschriftenartikel

Hauf, W.; Schlebusch, M.; Huege, J.; Kopka, J.; Hagemann, M.; Forchhammer, K.: Metabolic Changes in Synechocystis PCC6803 upon Nitrogen-Starvation: Excess NADPH Sustains Polyhydroxybutyrate Accumulation. Metabolites 3, S. 101 - 118 (2013)

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84.

Zeitschriftenartikel

Perez-Delgado, C. M.; Garcia-Calderon, M.; Sanchez, D. H.; Udvardi, M. K.; Kopka, J.; Marquez, A. J.; Betti, M.: Transcriptomic and Metabolic Changes Associated with Photorespiratory Ammonium Accumulation in the Model Legume Lotus japonicus. Plant Physiology 162 (4), S. 1834 - 1848 (2013)

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85.

Zeitschriftenartikel

Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiology 163 (4), S. 1623 - 1639 (2013)

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86.

Zeitschriftenartikel

Schwarz, D.; Orf, I.; Kopka, J.; Hagemann, M.: Recent Applications of Metabolomics Toward Cyanobacteria. Metabolites 3, S. 72 - 100 (2013)

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87.

Zeitschriftenartikel

Strehmel, N.; Kopka, J.; Scheel, D.; Böttcher, C.: Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS. Metabolics 10 (2), S. 324 - 336 (2013)

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88.

Zeitschriftenartikel

Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), S. 1290 - 1310 (2013)

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89.

Zeitschriftenartikel

Anetzberger, C.; Reiger, M.; Fekete, A.; Schell, U.; Stambrau, N.; Plener, L.; Kopka, J.; Schmitt-Kopplin, P.; Hilbi, H.; Jung, K.: Autoinducers act as biological timers in Vibrio harveyi. PLoS One 7 (10), S. e48310 (2012)

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90.

Zeitschriftenartikel

Beisser, D.; Grohme, M. A.; Kopka, J.; Frohme, M.; Schill, R. O.; Hengherr, S.; Dandekar, T.; Klau, G. W.; Dittrich, M.; Muller, T.: Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology 6, S. 72 (2012)

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91.

Zeitschriftenartikel

Calingacion, M. N.; Boualaphanh, C.; Daygon, V. D.; Anacleto, R.; Sackville Hamilton, R.; Biais, B.; Deborde, C.; Maucourt, M.; Moing, A.; Mumm, R. et al.; de Vos, R. C. H.; Erban, A.; Kopka, J.; Hansen, T. H.; Laursen, K. H.; Schjoerring, J. K.; Hall, R. D.; Fitzgerald, M. A.: A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8 (5), S. 771 - 783 (2012)

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92.

Zeitschriftenartikel

Dunn, W. B.; Erban, A.; Weber, R. J. M.; Creek, D. J.; Brown, M.; Breitling, R.; Hankemeier, T.; Goodacre, R.; Neumann, S.; Kopka, J. et al.; Viant, M. R.: Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics 9 (S1), S. 44 - 66 (2012)

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93.

Zeitschriftenartikel

Fuehrs, H.; Specht, A.; Erban, A.; Kopka, J.; Horst, W. J.: Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. Journal of Experimental Botany 63 (1), S. 329 - 340 (2012)

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94.

Zeitschriftenartikel

Hackenberg, C.; Huege, J.; Engelhardt, A.; Wittink, F.; Laue, M.; Matthijs, H. C.; Kopka, J.; Bauwe, H.; Hagemann, M.: Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158 (Pt 2), S. 398 - 413 (2012)

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95.

Zeitschriftenartikel

Rohloff, J.; Kopka, J.; Erban, A.; Winge, P.; Wilson, R. C.; Bones, A. M.; Davik, J.; Randall, S. K.; Alsheikh, M. K.: Metabolite profiling reveals novel multi-level cold responses in the diploid model Fragaria vesca (woodland strawberry). Phytochemistry 77, S. 99 - 109 (2012)

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96.

Zeitschriftenartikel

Sanchez, D. H.; Schwabe, F.; Erban, A.; Udvardi, M. K.; Kopka, J.: Comparative metabolomics of drought acclimation in model and forage legumes. Plant Cell and Environment 35 (1), S. 136 - 149 (2012)

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97.

Zeitschriftenartikel

Siahpoosh, M. R.; Sanchez, D. H.; Schlereth, A.; Scofield, G. N.; Furbank, R. T.; van Dongen, J. T.; Kopka, J.: Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309. Plant Science 182, S. 101 - 111 (2012)

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98.

Zeitschriftenartikel

Clauss, K.; von Roepenack-Lahaye, E.; Boettcher, C.; Roth, M. R.; Welti, R.; Erban, A.; Kopka, J.; Scheel, D.; Milkowski, C.; Strack, D.: Overexpression of Sinapine Esterase BnSCE3 in Oilseed Rape Seeds Triggers Global Changes in Seed Metabolism. Plant Physiology 155 (3), S. 1127 - 1145 (2011)

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99.

Zeitschriftenartikel

Hackenberg, C.; Kern, R.; Huege, J.; Stal, L. J.; Tsuji, Y.; Kopka, J.; Shiraiwa, Y.; Bauwe, H.; Hagemann, M.: Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. The Plant Cell 23 (8), S. 2978 - 2990 (2011)

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100.

Zeitschriftenartikel

Huege, J.; Goetze, J.; Schwarz, D.; Bauwe, H.; Hagemann, M.; Kopka, J.: Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis. PLoS One 6 (1), S. e16278 (2011)

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101.

Zeitschriftenartikel

Moing, A.; Aharoni, A.; Biais, B.; Rogachev, I.; Meir, S.; Brodsky, L.; Allwood, J. W.; Erban, A.; Dunn, W. B.; Kay, L. et al.; de Koning, S.; de Vos, R. C. H.; Jonker, H.; Mumm, R.; Deborde, C.; Maucourt, M.; Bernillon, S.; Gibon, Y.; Hansen, T. H.; Husted, S.; Goodacre, R.; Kopka, J.; Schjoerring, J. K.; Rolin, D.; Hall, R. D.: Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics. New Phytologist 190 (3), S. 683 - 696 (2011)

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102.

Zeitschriftenartikel

Sanchez, D. H.; Pieckenstain, F. L.; Escaray, F.; Erban, A.; Kraemer, U.; Udvardi, M. K.; Kopka, J.: Comparative ionomics and metabolomics in extremophile and glycophytic Lotus species under salt stress challenge the metabolic pre-adaptation hypothesis. Plant Cell and Environment 34 (4), S. 605 - 617 (2011)

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103.

Zeitschriftenartikel

Sanchez, D. H.; Pieckenstain, F. L.; Szymanski, J.; Erban, A.; Bromke, M.; Hannah, M. A.; Kraemer, U.; Kopka, J.; Udvardi, M. K.: Comparative Functional Genomics of Salt Stress in Related Model and Cultivated Plants Identifies and Overcomes Limitations to Translational Genomics. PLoS One 6 (2), S. e17094 (2011)

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104.

Zeitschriftenartikel

Schwarz, D.; Nodop, A.; Huege, J.; Purfurst, S.; Forchhammer, K.; Michel, K. P.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolic and Transcriptomic Phenotyping of Inorganic Carbon Acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. Plant Physiology 155 (4), S. 1640 - 1655 (2011)

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105.

Zeitschriftenartikel

Ebert, B.; Zoller, D.; Erban, A.; Fehrle, I.; Hartmann, J.; Niehl, A.; Kopka, J.; Fisahn, J.: Metabolic profiling of Arabidopsis thaliana epidermal cells. Journal of Experimental Botany 61 (5), S. 1321 - 1335 (2010)

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106.

Zeitschriftenartikel

Girin, T.; El-Kafafi, E. S.; Widiez, T.; Erban, A.; Hubberten, H.-M.; Kopka, J.; Hoefgen, R.; Gojon, A.; Lepetit, M.: Identification of Arabidopsis Mutants Impaired in the Systemic Regulation of Root Nitrate Uptake by the Nitrogen Status of the Plant. Plant Physiology 153 (3), S. 1250 - 1260 (2010)

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107.

Zeitschriftenartikel

Hofmann, J.; El Ashry, A.; Anwar, S.; Erban, A.; Kopka, J.; Grundler, F.: Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant Journal 62 (6), S. 1058 - 1071 (2010)

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108.

Zeitschriftenartikel

Hummel, J.; Strehmel, N.; Selbig, J.; Walther, D.; Kopka, J.: Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6 (2), S. 322 - 333 (2010)

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109.

Zeitschriftenartikel

Korn, M.; Gärtner, T.; Erban, A.; Kopka, J.; Selbig, J.; Hincha, D. K.: Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition. Molecular Plant 3 (1), S. 224 - 235 (2010)

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110.

Zeitschriftenartikel

Lugan, R.; Niogret, M. F.; Leport, L.; Guegan, J. P.; Larher, F. R.; Savoure, A.; Kopka, J.; Bouchereau, A.: Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte. Plant Journal 64 (2), S. 215 - 229 (2010)

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111.

Zeitschriftenartikel

Parveen, I.; Moorby, J. M.; Fraser, M. D.; Erban, A.; Kopka, J.: Relationship between Grazing Lamb Growth Rate and Blood Plasma Analytes as Profiled by Gas Chromatography with Time-of-Flight Mass Spectrometry (GC-TOF/MS). Journal of Agricultural and Food Chemistry 58 (2), S. 913 - 917 (2010)

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112.

Zeitschriftenartikel

Sanchez, D. H.; Szymanski, J.; Erban, A.; Udvardi, M. K.; Kopka, J.: Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus. Plant Cell and Environment 33 (4), S. 468 - 480 (2010)

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113.

Zeitschriftenartikel

Steinfath, M.; Strehmel, N.; Peters, R.; Schauer, N.; Groth, D.; Hummel, J.; Steup, M.; Selbig, J.; Kopka, J.; Geigenberger, P. et al.; van Dongen, J. T.: Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8 (8), S. 900 - 911 (2010)

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114.

Zeitschriftenartikel

Strassburg, K.; Walther, D.; Takahashi, H.; Kanaya, S.; Kopka, J.: Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14 (3), S. 249 - 259 (2010)

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115.

Zeitschriftenartikel

Strehmel, N.; Praeger, U.; Koenig, C.; Fehrle, I.; Erban, A.; Geyer, M.; Kopka, J.; van Dongen, J. T.: Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact. Postharvest Biology and Technology 56 (2), S. 109 - 116 (2010)

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116.

Zeitschriftenartikel

Walther, D.; Strassburg, K.; Durek, P.; Kopka, J.: Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 14 (3), S. 261 - 274 (2010)

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117.

Zeitschriftenartikel

Weichert, N.; Saalbach, I.; Weichert, H.; Kohl, S.; Erban, A.; Kopka, J.; Hause, B.; Varshney, A.; Sreenivasulu, N.; Strickert, M. et al.; Kumlehn, J.; Weschke, W.; Weber, H.: Increasing Sucrose Uptake Capacity of Wheat Grains Stimulates Storage Protein Synthesis. Plant Physiology 152 (2), S. 698 - 710 (2010)

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118.

Zeitschriftenartikel

Wulff-Zottele, C.; Gatzke, N.; Kopka, J.; Orellana, A.; Hoefgen, R.; Fisahn, J.; Hesse, H.: Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion. Plant Cell and Environment 33 (11), S. 1974 - 1988 (2010)

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119.

Zeitschriftenartikel

Allwood, J. W.; Erban, A.; de Koning, S.; Dunn, W. B.; Lüdemann, A.; Lommen, A.; Kay, L.; Loscher, R.; Kopka, J.; Goodacre, R.: Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5 (4), S. 479 - 496 (2009)

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120.

Zeitschriftenartikel

Fuehrs, H.; Goetze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; van Dorsselaer, A.; Kopka, J.; Braun, H. P.; Horst, W. J.: Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60 (6), S. 1663 - 1678 (2009)

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