Hofmann, J.; El Ashry, A.; Anwar, S.; Erban, A.; Kopka, J.; Grundler, F.: Metabolic profiling reveals local and systemic responses of host plants to nematode parasitism. Plant Journal 62 (6), S. 1058 - 1071 (2010)

Hummel, J.; Strehmel, N.; Selbig, J.; Walther, D.; Kopka, J.: Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6 (2), S. 322 - 333 (2010)

Korn, M.; Gärtner, T.; Erban, A.; Kopka, J.; Selbig, J.; Hincha, D. K.: Predicting Arabidopsis Freezing Tolerance and Heterosis in Freezing Tolerance from Metabolite Composition. Molecular Plant 3 (1), S. 224 - 235 (2010)

Lugan, R.; Niogret, M. F.; Leport, L.; Guegan, J. P.; Larher, F. R.; Savoure, A.; Kopka, J.; Bouchereau, A.: Metabolome and water homeostasis analysis of Thellungiella salsuginea suggests that dehydration tolerance is a key response to osmotic stress in this halophyte. Plant Journal 64 (2), S. 215 - 229 (2010)

Parveen, I.; Moorby, J. M.; Fraser, M. D.; Erban, A.; Kopka, J.: Relationship between Grazing Lamb Growth Rate and Blood Plasma Analytes as Profiled by Gas Chromatography with Time-of-Flight Mass Spectrometry (GC-TOF/MS). Journal of Agricultural and Food Chemistry 58 (2), S. 913 - 917 (2010)

Sanchez, D. H.; Szymanski, J.; Erban, A.; Udvardi, M. K.; Kopka, J.: Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus. Plant Cell and Environment 33 (4), S. 468 - 480 (2010)

Steinfath, M.; Strehmel, N.; Peters, R.; Schauer, N.; Groth, D.; Hummel, J.; Steup, M.; Selbig, J.; Kopka, J.; Geigenberger, P. et al.; van Dongen, J. T.: Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8 (8), S. 900 - 911 (2010)

Strassburg, K.; Walther, D.; Takahashi, H.; Kanaya, S.; Kopka, J.: Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14 (3), S. 249 - 259 (2010)

Strehmel, N.; Praeger, U.; Koenig, C.; Fehrle, I.; Erban, A.; Geyer, M.; Kopka, J.; van Dongen, J. T.: Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact. Postharvest Biology and Technology 56 (2), S. 109 - 116 (2010)

Walther, D.; Strassburg, K.; Durek, P.; Kopka, J.: Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 14 (3), S. 261 - 274 (2010)

Weichert, N.; Saalbach, I.; Weichert, H.; Kohl, S.; Erban, A.; Kopka, J.; Hause, B.; Varshney, A.; Sreenivasulu, N.; Strickert, M. et al.; Kumlehn, J.; Weschke, W.; Weber, H.: Increasing Sucrose Uptake Capacity of Wheat Grains Stimulates Storage Protein Synthesis. Plant Physiology 152 (2), S. 698 - 710 (2010)

Wulff-Zottele, C.; Gatzke, N.; Kopka, J.; Orellana, A.; Hoefgen, R.; Fisahn, J.; Hesse, H.: Photosynthesis and metabolism interact during acclimation of Arabidopsis thaliana to high irradiance and sulphur depletion. Plant Cell and Environment 33 (11), S. 1974 - 1988 (2010)

Allwood, J. W.; Erban, A.; de Koning, S.; Dunn, W. B.; Lüdemann, A.; Lommen, A.; Kay, L.; Loscher, R.; Kopka, J.; Goodacre, R.: Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5 (4), S. 479 - 496 (2009)

Fuehrs, H.; Goetze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; van Dorsselaer, A.; Kopka, J.; Braun, H. P.; Horst, W. J.: Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60 (6), S. 1663 - 1678 (2009)

Hernandez, G.; Valdes-Lopez, O.; Ramirez, M.; Goffard, N.; Weiller, G.; Aparicio-Fabre, R.; Fuentes, S. I.; Erban, A.; Kopka, J.; Udvardi, M. K. et al.; Vance, C. P.: Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants. Plant Physiology 151 (3), S. 1221 - 1238 (2009)

Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), S. 82 - 91 (2009)

Krall, L.; Huege, J.; Catchpole, G.; Steinhauser, D.; Willmitzer, L.: Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 877 (27), S. 2952 - 2960 (2009)

Lippold, F.; Sanchez, D. H.; Musialak-Lange, M.; Schlereth, A.; Scheible, W.-R.; Hincha, D. K.; Udvardi, M. K.: AtMyb41 Regulates Transcriptional and Metabolic Responses to Osmotic Stress in Arabidopsis. Plant Physiology 149 (4), S. 1761 - 1772 (2009)

Lugan, R.; Niogret, M. F.; Kervazo, L.; Larher, F. R.; Kopka, J.; Bouchereau, A.: Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell and Environment 32 (2), S. 95 - 108 (2009)

Mrosk, C.; Forner, S.; Hause, G.; Kuester, H.; Kopka, J.; Hause, B.: Composite Medicago truncatula plants harbouring Agrobacterium rhizogenes-transformed roots reveal normal mycorrhization by Glomus intraradices. Journal of Experimental Botany 60 (13), S. 3797 - 3807 (2009)