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Steinhauser, D.; Junker, B. H.; Luedemann, A.; Selbig, J.; Kopka, J.: Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinformatics 20 (12), S. 1928 - 1939 (2004)
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Steinhauser, D.; Usadel, B.; Luedemann, A.; Thimm, O.; Kopka, J.: CSB.DB: a comprehensive systems-biology database. Bioinformatics 20 (18), S. 3647 - 3651 (2004)
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Birkemeyer, C.; Kolasa, A.; Kopka, J.: Comprehensive chemical derivatization for gas chromatography-mass spectrometry-based multi-targeted profiling of the major phytohormones. Journal of Chromatography A 993 (1-2), S. 89 - 102 (2003)
204.
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Hunt, L.; Mills, L. N.; Pical, C.; Leckie, C. P.; Aitken, F. L.; Kopka, J.; Mueller-Roeber, B.; McAinsh, M. R.; Hetherington, A. M.; Gray, J. E.: Phospholipase C is required for the control of stomatal aperture by ABA. Plant Journal 34 (1), S. 47 - 55 (2003)
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Urbanczyk-Wochniak, E.; Luedemann, A.; Kopka, J.; Selbig, J.; Roessner-Tunali, U.; Willmitzer, L.; Fernie, A. R.: Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4 (10), S. 989 - 993 (2003)
206.
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Wagner, C.; Sefkow, M.; Kopka, J.: Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62 (6), S. 887 - 900 (2003)
207.
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Bohmert, K.; Balbo, I.; Kopka, J.; Mittendorf, V.; Nawrath, C.; Poirier, Y.; Tischendorf, G.; Trethewey, R. N.; Willmitzer, L.: Transgenic Arabidopsis plants can accumulate polyhydroxybutyrate to up to 4% of their fresh weight. Planta 211 (6), S. 841 - 845 (2000)
208.
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Fiehn, O.; Kopka, J.; Doermann, P.; Altmann, T.; Trethewey, R. N.; Willmitzer, L.: Metabolite profiling for plant functional genomics. Nature Biotechnology 18 (11), S. 1157 - 1161 (2000)
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Fiehn, O.; Kopka, J.; Trethewey, R. N.; Willmitzer, L.: Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry. Analytical Chemistry 72 (15), S. 3573 - 3580 (2000)
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Roessner, U.; Wagner, C.; Kopka, J.; Trethewey, R. N.; Willmitzer, L.: Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23 (1), S. 131 - 142 (2000)
211.
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Kopka, J.; Pical, C.; Gray, J. E.; Mueller-Roeber, B.: Molecular and enzymatic characterization of three phosphoinositide-specific phospholipase C isoforms from potato. Plant Physiology 116 (1), S. 239 - 250 (1998)
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Kopka, J.; Pical, C.; Hetherington, A. M.; Mueller-Roeber, B.: Ca2+/phospholipid-binding (C-2) domain in multiple plant proteins: novel components of the calcium-sensing apparatus. Plant Molecular Biology 36 (5), S. 627 - 637 (1998)
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Kopka, J.; Ludewig, M.; Mueller-Roeber, B.: Complementary DNAs encoding eukaryotic-type cytidine-5'-diphosphate-diacylglycerol synthases of two plant species. Plant Physiology 113 (3), S. 997 - 1002 (1997)

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Nieva, A.S.; Ruiz, O. A.: Lotus spp.: A Foreigner that Came to Stay Forever: Economic and Environmental Changes Caused by Its Naturalization in the Salado River Basin (Argentina). In: Saline and Alkaline Soils in Latin America: Natural Resources, Management and Productive Alternatives, S. 431 - 446 (Hg. Taleisnik, E.; Lavado, R. S.). Springer International Publishing, Cham (2021)
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Erban, A.; Martinez-Seidel, F.; Rajarathinam, Y.; Dethloff, F.; Orf, I.; Fehrle, I.; Alpers, J.; Beine-Golovchuk, O.; Kopka, J.: Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods in molecular biology, Bd. 2156, S. 203 - 239 (Hg. Hincha, D. K.; Zuther, E.) (2020)
216.
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Vallarino, J. G.; Erban, A.; Fehrle, I.; Fernie, A. R.; Kopka, J.; Osorio, S.: Acquisition of Volatile Compounds by Gas Chromatography–Mass Spectrometry (GC-MS). In: Methods in Molecular Biology, Bd. 1778, S. 225 - 240 (Hg. António, C.). Humana Press, Clifton, N.J. (2018)
217.
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Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, S. 339 - 358 (Hg. Guo, Y.). Springer New York, New York, NY (2018)
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Zuther, E.; Lee, Y. P.; Erban, A.; Kopka, J.; Hincha, D. K.: Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species. In: Survival Strategies in Extreme Cold and Desiccation: Adaptation Mechanisms and Their Applications, S. 81 - 98 (Hg. Iwaya-Inoue, M.; Sakurai, M.; Uemura, M.). Springer Singapore, Singapore (2018)
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Dethloff, F.; Erban, A.; Orf, I.; Alpers, J.; Fehrle, I.; Beine-Golovchuk, O.; Schmidt, S.; Schwachtje, J.; Kopka, J.: Profiling Methods to Identify Cold-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods and Protocols, S. 171 - 197. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
220.
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Huege, J.; Goetze, J.; Dethloff, F.; Junker, B.; Kopka, J.: Quantification of Stable Isotope Label in Metabolites via Mass Spectrometry. In: Plant Chemical Genomics: Methods and Protocols, S. 213 - 223. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
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