Journal Article (195)
34.
Journal Article
18 (3), e1009906 (2022)
COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions. PLoS Computational Biology 35.
Journal Article
7 (1), e01216-21 (2022)
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis. mSystems 36.
Journal Article
12, 758933 (2021)
Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 37.
Journal Article
8, pp. 78 - 91 (2021)
Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 38.
Journal Article
7 (51), eabi8307 (2021)
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 39.
Journal Article
11 (1), 23776 (2021)
Identification of flux trade-offs in metabolic networks. Scientific Reports 40.
Journal Article
894, pp. 3 - 11 (2021)
Coherent network partitions: Characterizations with cographs and prime graphs. Theoretical computer science 41.
Journal Article
34 (1), pp. 557 - 578 (2021)
Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 42.
Journal Article
19, pp. 5255 - 5263 (2021)
Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient. Computational and Structural Biotechnology Journal 43.
Journal Article
187 (4), pp. 2419 - 2434 (2021)
Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 44.
Journal Article
37 (21), pp. 3848 - 3855 (2021)
Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli. Bioinformatics 45.
Journal Article
44 (10), pp. 3398 - 3411 (2021)
Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment 46.
Journal Article
40 (15), e106800 (2021)
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 47.
Journal Article
37 (12), pp. 1717 - 1723 (2021)
GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics 48.
Journal Article
31 (15), pp. 3262 - 3274 (2021)
KATANIN and CLASP function at different spatial scales to mediate microtubule response to mechanical stress in Arabidopsis cotyledons. Current Biology 49.
Journal Article
12 (1), 458 (2021)
A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells. Nature Communications 50.
Journal Article
22 (9), 4790 (2021)
Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation. International Journal of Molecular Sciences 51.
Journal Article
11 (1), 17415 (2021)
A structural property for reduction of biochemical networks. Scientific Reports 52.
Journal Article
37 (18), pp. 2896 - 2904 (2021)
L2,1-norm regularized multivariate regression model with applications to genomic prediction. Bioinformatics 53.
Journal Article
37 (1), pp. 73 - 81 (2021)
PC2P: parameter-free network-based prediction of protein complexes. Bioinformatics 54.
Journal Article
11 (1), 4787 (2021)
Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism. Scientific Reports 55.
Journal Article
19, pp. 2170 - 2178 (2021)
Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 56.
Journal Article
11, 8544 (2021)
Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis. Scientific Reports 57.
Journal Article
257, 153354 (2021)
Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. Journal of Plant Physiology 58.
Journal Article
36 (9), pp. 2950 - 2951 (2020)
CytoSeg 2.0: automated extraction of actin filaments. Bioinformatics 59.
Journal Article
43 (6), pp. 1376 - 1393 (2020)
Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 60.
Journal Article
Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)
61.
Journal Article
80, 101051 (2020)
Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 62.
Journal Article
103 (6), pp. 2168 - 2177 (2020)
Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal 63.
Journal Article
21 (23), pp. 1 - 27 (2020)
Comparative analysis of ros network genes in extremophile eukaryotes. International Journal of Molecular Sciences 64.
Journal Article
5 (2), e20106 (2020)
Supervised Learning of Gene Regulatory Networks. Current Protocols in Plant Biology 65.
Journal Article
16 (4), e1007832 (2020)
Flux-based hierarchical organization of Escherichia coli’s metabolic network. PLoS Computational Biology 66.
Journal Article
11 (1), 2410 (2020)
Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications