Publikationen von F. Scossa

Naake, T., D'Auria, J. C., Fernie, A. R. & Scossa, F. Phylogenomic and synteny analysis of BAHD and SCP/SCPL gene families reveal their evolutionary histories in plant specialized metabolism. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379, (2024).

Naake, T., Zhu, F., Alseekh, S., Scossa, F., de Souza, L. P., Borghi, M., Brotman, Y., Mori, T., Nakabayashi, R., Tohge, T. & Fernie, A. R. Genome-wide association studies identify loci controlling specialized seed metabolites in Arabidopsis. Plant Physiology 194, 1705–1721 (2024).

Zhang, Y. J., Wiese, L., Fang, H., Alseekh, S., de Souza, L. P., Scossa, F., Molloy, J., Christmann, M. & Fernie, A. R. Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16, 1951–1961 (2023).

Moghe, G., Kruse, L. H., Petersen, M., Scossa, F., Fernie, A. R., Gaquerel, E. & D'Auria, J. C. BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74, 165–194 (2023).

Naves, E. R., Scossa, F., Araújo, W. L., Nunes-Nesi, A., Fernie, A. R. & Zsögön, A. Heterosis for capsacinoids accumulation in chili pepper hybrids is dependent on parent-of-origin effect. Scientific Reports 12, (2022).

Rodrigues-Salvador, A., Lana-Costa, J., Omena-Garcia, R. P., Batista-Silva, W., Scossa, F., Rosado-Souza, L., Pérez-Díaz, J. L., Menezes-Silva, P. E., DaMatta, F. M., Sulpice, R., Araújo, W. L., Zsögön, A., Fernie, A. R. & Nunes-Nesi, A. Metabolic shifts during fruit development in pungent and non-pungent peppers. Food Chemistry 375, (2022).

Gao, Y., Thiele, W., Saleh, O., Scossa, F., Aarabi, F., Zhang, H. M., Sampathkumar, A., Kühn, K., Fernie, A. R., Bock, R., Schöttler, M. A. & Zoschke, R. Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation. Plant Cell 34, 2056–2079 (2022).

de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).

Scossa, F. & Fernie, A. R. When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science 26, 543–545 (2021).

Gill, R. A., Scossa, F., King, G. J., Golicz, A., Tong, C., Snowdon, R. J., Fernie, A. R. & Liu, S. On the Role of Transposable Elements in the Regulation of Gene Expression and Subgenomic Interactions in Crop Genomes. Critical Reviews in Plant Sciences 40, 157–189 (2021).

Scossa, F., Alseekh, S. & Fernie, A. R. Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, (2021).

Scossa, F. & Fernie, A. R. Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, 1579–1594 (2021).

Zhang, W., Luo, C., Scossa, F., Zhang, Q., Usadel, B., Fernie, A. R., Mei, H. & Wen, W. A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants. The Plant Journal 105, 197–208 (2021).

Alseekh, S., Scossa, F. & Fernie, A. R. Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25, 1062–1064 (2020).

Karagiannis, E., Michailidis, M., Tanou, G., Scossa, F., Sarrou, E., Stamatakis, G., Samiotaki, M., Martens, S., Fernie, A. R. & Molassiotis, A. Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Horticulture Research 7, (2020).

Karagiannis, E., Tanou, G., Scossa, F., Samiotaki, M., Michailidis, M., Manioudaki, M., Laurens, F., Job, D., Fernie, A. R., Orsel, M. & Molassiotis, A. Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science 11, (2020).

Scossa, F. & Fernie, A. R. The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, 482–500 (2020).

Tohge, T., Scossa, F., Wendenburg, R., Frasse, P., Balbo, I., Watanabe, M., Alseekh, S., Jadha, S. S., Delfin, J. C., Lohse, M., Giavalisco, P., Usadel, B., Zhang, Y. J., Luo, J., Bouzayen, M. & Fernie, A. R. Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13, 1027–1046 (2020).

Zhang, W., Zhang, Y., Qiu, H., Guo, Y., Wan, H., Zhang, X., Scossa, F., Alseekh, S., Zhang, Q., Wang, P., Xu, L., Schmidt, M. H.-W., Jia, X., Li, D., Zhu, A., Guo, F., Chen, W., Ni, D., Usadel, B., Fernie, A. R. & Wen, W. Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11, (2020).

de Souza, L. P., Scossa, F., Proost, S., Bitocchi, E., Papa, R., Tohge, T. & Fernie, A. R. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97, 1132–1153 (2019).