Publikationen von Z. Nikoloski

Redestig, H., Szymanski, J., Hirai, M. Y., Selbig, J., Willmitzer, L., Saito, K. & Nikoloski, Z. in Biology of Plant Metabolomics (Hrsg. Hall, R. D.) (Wiley-Blackwell, 2011). doi:10.1002/9781444339956.ch9

Omranian, N. & Nikoloski, Z. CUBCO: Prediction of Protein Complexes Based on Min-cut Network Partitioning into Biclique Spanned Subgraphs. Studies in Computational Intelligence (Springer International Publishing, 2022). doi:10.1007/978-3-030-93413-2_50

Sajitz-Hermstein, M. & Nikoloski, Z. Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. in Information Processing in Cells and Tissues 169–172 (2015). doi:10.1007/978-3-319-23108-2_14

Larhlimi, A., Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. in 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) I502–I508 (2012). doi:10.1093/bioinformatics/bts381

Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Thermodynamic landscapes of randomized large-scale metabolic networks. in 7th International Workshop on Computational Systems Biology, WCSB 2010 (Hrsg. Nykter, M., Ruusuvuori, P., Carlberg, C. & Yli-Harja, O.) 23–26 (Tampere International Center for Signal Processing, 2010). auf <http://hdl.handle.net/11858/00-001M-0000-0014-2463-2>

Arnold, A. & Nikoloski, Z. Design and analysis of a reference model of sugar phosphate metabolism. in (2010). auf <http://hdl.handle.net/11858/00-001M-0000-0014-2477-5>

van Dongen, J. T. & Nikoloski, Z. Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions. New Phytologist 190, 273–276 (2011).

Dellero, Y. & Nikoloski, Z. Editorial: Isotopic Labeling Approaches for Exploring Plant Metabolism Dynamics. Frontiers in Plant Science 14, (2023).

Hanson, A. D., Millar, A. H., Nikoloski, Z. & Way, D. A. Focus on respiration. Plant Physiology 191, 2067–2069 (2023).

Ferreira, M. A. D. M., Silveira, W. B. D. & Nikoloski, Z. Protein constraints in genome-scale metabolic models: Data integration, parameter estimation, and prediction of metabolic phenotypes. Biotechnology and Bioengineering 121, 915–930 (2024).

Wendering, P. & Nikoloski, Z. Model-driven insights into the effects of temperature on metabolism. Biotechnology Advances 67, (2023).

Huß, S. & Nikoloski, Z. Systematic comparison of local approaches for isotopically nonstationary metabolic flux analysis. Frontiers in Plant Science 14, (2023).

Østerlund, I., Persson, S. & Nikoloski, Z. Tracing and tracking filamentous structures across scales: A systematic review. Computational and Structural Biotechnology Journal 21, 452–462 (2023).

Omranian, S., Nikoloski, Z. & Grimm, D. G. Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward. Computational and Structural Biotechnology Journal 20, 2699–2712 (2022).

Tong, H., Küken, A., Razaghi-Moghadam, Z. & Nikoloski, Z. Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 78, 5123–5138 (2021).

Medeiros, D. B., Daloso, D. M., Fernie, A. R., Nikoloski, Z. & Araujo, W. L. Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 38, 1457–1470 (2015).

Toepfer, N., Kleessen, S. & Nikoloski, Z. Integration of metabolomics data into metabolic networks. Frontiers in Plant Science 6, (2015).

Estevez, S. R. & Nikoloski, Z. Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 5, 491–491 (2014).

Arnold, A. & Nikoloski, Z. Comprehensive classification and perspective for modelling photorespiratory metabolism. Plant Biology 15, 667–675 (2013).

Fernie, A. R., Bauwe, H., Eisenhut, M., Florian, A., Hanson, D. T., Hagemann, M., Keech, O., Mielewczik, M., Nikoloski, Z., Peterhansel, C., Roje, S., Sage, R., Timm, S., von Cammerer, S., Weber, A. P. & Westhoff, P. Perspectives on plant photorespiratory metabolism. Plant Biology 15, 748–753 (2013).