Sajitz-Hermstein, M.; Nikoloski, Z.: Structural control of metabolic flux. PLoS Computational Biology 9 (12), e1003368 (2013)

Hochberg, U.; Degu, A.; Toubiana, D.; Gendler, T.; Nikoloski, Z.; Rachmilevitch, S.; Fait, A.: Metabolic profiling and network analysis reveal coordinated changes in grapevine water stress response. BMC Plant Biology 13 (184) (2013)

Toepfer, N.; Nikoloski, Z.: Large-scale modeling provides insights into Arabidopsis's acclimation to changing light and temperature conditions. Plant Signaling & Behavior 8 (9), e25480 (2013)

Kleessen, S.; Klie, S.; Nikoloski, Z.: Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales. The Plant Cell 25 (6), S. 1917 - 1927 (2013)

Toepfer, N.; Caldana, C.; Grimbs, S.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.: Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25 (4), S. 1197 - 1211 (2013)

Neigenfind, J.; Grimbs, S.; Nikoloski, Z.: On the relation between reactions and complexes of (bio)chemical reaction networks. Journal of Theoretical Biology 317, S. 359 - 365 (2013)

Omranian, N.; Klie, S.; Mueller-Roeber, B.; Nikoloski, Z.: Network-Based Segmentation of Biological Multivariate Time Series. PLoS One 8 (5), S. e62974 (2013)

Sulpice, R.; Nikoloski, Z.; Tschoep, H.; Antonio, C.; Kleeson, S.; Lahrlimi, A.; Selbig, J.; Hirofumi, I.; Gibon, Y.; Fernie, A. R. et al.; Stitt, M.: Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology 162 (1), S. 347 - 363 (2013)

Szecowka, M.; Heise, R.; Tohge, T.; Nunes-Nesi, A.; Vosloh, D.; Huege, J.; Feil, R.; Lunn, J.; Nikoloski, Z.; Stitt, M. et al.; Fernie, A. R.; Arrivault, S.: Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 25 (2), S. 694 - 714 (2013)

Winck, F. V.; Arvidsson, S.; Mauricio Riano-Pachon, D.; Hempel, S.; Koseska, A.; Nikoloski, Z.; Urbina Gomez, D. A.; Rupprecht, J.; Mueller-Roeber, B.: Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation. PLoS One 8 (11), e79909 (2013)

Xue, W.; Batushansky, A.; Toubiana, D.; Botnick, I.; Szymanski, J.; Khozin-Goldberg, I.; Nikoloski, Z.; Lewinsohn, E.; Fait, A.: The Investment in Scent: Time-Resolved Metabolic Processes in Developing Volatile-Producing Nigella sativa L. Seeds. PLoS One 8 (9), e73061 (2013)

Zakharova, A.; Nikoloski, Z.; Koseska, A.: Dimensionality reduction of multistable biological systems. Bulletin of Mathematical Biology 75 (3), S. 373 - 392 (2013)

Arnold, A.; Nikoloski, Z.: Comprehensive classification and perspective for modelling photorespiratory metabolism. (2013)

Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. (2013)

Toubiana, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Network analysis: tackling complex data to study plant metabolism. (2013)