Zeitschriftenartikel (94)
51.
Zeitschriftenartikel
Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 1306, S. 177 - 194 (2015)
52.
Zeitschriftenartikel
Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity. Frontiers in molecular biosciences 2, 51 (2015)
53.
Zeitschriftenartikel
Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge. BMC Plant Biology 15, 137 (2015)
54.
Zeitschriftenartikel
Assessment of drought tolerance and its potential yield penalty in potato. Functional Plant Biology 42 (7), S. 655 - 667 (2015)
55.
Zeitschriftenartikel
Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One 10 (3), S. e0120533 - e0120533 (2015)
56.
Zeitschriftenartikel
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 164 (1), S. 181 - 200 (2014)
57.
Zeitschriftenartikel
Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. Plant Cell 26 (6), S. 2367 - 2389 (2014)
58.
Zeitschriftenartikel
The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P. Journal of Experimental Botany 65 (4), S. 1051 - 1068 (2014)
59.
Zeitschriftenartikel
Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 4, 540 (2013)
60.
Zeitschriftenartikel
The Metabolic Interplay between Plants and Phytopathogens. Metabolites 3 (1), S. 1 - 23 (2013)
61.
Zeitschriftenartikel
Data management pipeline for plant phenotyping in a multisite project. Functional Plant Biology 39 (10-11), S. 948 - 957 (2012)
62.
Zeitschriftenartikel
Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline. Plant Physiology 158 (4), S. 1534 - 1541 (2012)
63.
Zeitschriftenartikel
Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. Frontiers in Plant Science 3, S. 207 (2012)
64.
Zeitschriftenartikel
Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone. Frontiers in plant science 3, S. 272 (2012)
65.
Zeitschriftenartikel
Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 4, S. 483 (2011)
66.
Zeitschriftenartikel
Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites. PLoS Genetics 7 (6), S. e1002155 (2011)
67.
Zeitschriftenartikel
The influence of the local sequence environment on RNA loop structures. Rna-a Publication of the Rna Society 17 (7), S. 1247 - 1257 (2011)
68.
Zeitschriftenartikel
Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 11, S. 188 (2010)
69.
Zeitschriftenartikel
Decision tree supported substructure prediction of metabolites from GC-MS profiles. Metabolomics 6 (2), S. 322 - 333 (2010)
70.
Zeitschriftenartikel
Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 153 (2), S. 642 - 651 (2010)
71.
Zeitschriftenartikel
Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 11, S. 411 (2010)
72.
Zeitschriftenartikel
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. Nucleic Acids Research 38 (3), S. 970 - 980 (2010)
73.
Zeitschriftenartikel
Modeling RNA loops using sequence homology and geometric constraints. Bioinformatics 26 (13), S. 1671 - 1672 (2010)
74.
Zeitschriftenartikel
Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14 (3), S. 249 - 259 (2010)
75.
Zeitschriftenartikel
The complexity of gene expression dynamics revealed by permutation entropy. BMC Bioinformatics 11, S. 607 (2010)
76.
Zeitschriftenartikel
Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast. OMICS: A Journal of Integrative Biology 14 (3), S. 261 - 274 (2010)
77.
Zeitschriftenartikel
Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 37 (9), S. e66 (2009)
78.
Zeitschriftenartikel
Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 69 (1-2), S. 133 - 153 (2009)
79.
Zeitschriftenartikel
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, S. 117 (2009)
80.
Zeitschriftenartikel
Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 9 (7), S. 1916 - 1924 (2009)
81.
Zeitschriftenartikel
Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 150 (3), S. 1541 - 1555 (2009)
82.
Zeitschriftenartikel
The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, S. 100 (2008)
83.
Zeitschriftenartikel
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), S. D1015 - D1021 (2008)
84.
Zeitschriftenartikel
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, S. 11 (2008)
85.
Zeitschriftenartikel
Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, S. 16 - 17 (2008)
86.
Zeitschriftenartikel
Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), S. 157 - 166 (2008)
87.
Zeitschriftenartikel
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, S. 216 (2007)
88.
Zeitschriftenartikel
pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23 (9), S. 1164 - 1167 (2007)
89.
Zeitschriftenartikel
The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana. PLoS Genetics 3 (2), S. e11 (2007)
90.
Zeitschriftenartikel
Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling. American Journal of Transplantation 6 (1), S. 150 - 160 (2006)
91.
Zeitschriftenartikel
Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation more than a hemodynamic marker. Circulation 114 (1 Suppl), S. I21 - I26 (2006)
92.
Zeitschriftenartikel
Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABA(A)) receptor gamma 2 subunit, mediates subunit interaction and cell surface localization. Journal of Biological Chemistry 279 (14), S. 14179 - 14183 (2004)
93.
Zeitschriftenartikel
MolSurfer: a macromolecular interface navigator. Nucleic Acids Research 31 (13), S. 3349 - 3351 (2003)
94.
Zeitschriftenartikel
Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell 113 (3), S. 369 - 381 (2003)
Buchkapitel (9)
95.
Buchkapitel
Specifics of Metabolite-Protein Interactions and Their Computational Analysis and Prediction. In: Methods in Molecular Biology (Hg. Walker, J. M.) (2023)
96.
Buchkapitel
The combinatorics of cis-regulatory elements: from cooperatively acting motifs to gene regulatory networks. In: The analysis of cis-elements: Current developments, knowledge and applications to gene networking, S. 176 - 188 (Hg. Berendzen, K.; Wanke, D.). Bentham Books, AG Bussum (2013)
97.
Buchkapitel
Mass spectral search and analysis using the Golm Metabolome Database. In: The Handbook of Plant Metabolomics, S. 321 - 343 (Hg. Weckwerth, W.) (2012)
98.
Buchkapitel
Conducting molecular biomarker discovery studies in plants. In: High Throughput Phenotyping in Plants, 10 (Hg. Normanly, J.). Humana Press Inc., Totowa, NJ, USA (2012)
99.
Buchkapitel
Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Aufl., S. 317 - 342 (Hg. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
100.
Buchkapitel
Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Bioinformatics for Comparative Proteomics, 21, 2010/12/01 Aufl., S. 341 - 363 (Hg. Wu, C. H.; Chen, C.). Humana Press Inc., Totowa, NJ, USA (2011)